SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48330 | AT | Annotation by Michelle Graham. TAIR10: protein-l-isoaspartate methyltransferase 1 | chr3:17892969-17893975 REVERSE LENGTH=230 | SoyBase | E_val: 2.00E-129 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004719 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | SoyBase | N/A | ISS |
| KOG1661 | KOG | Protein-L-isoaspartate(D-aspartate) O-methyltransferase | JGI | ISS | |
| PTHR11579 | Panther | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE | JGI | ISS | |
| PF01135 | PFAM | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | JGI | ISS | |
| UniRef100_I1K064 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein-L-isoaspartate O-methyltransferase n=1 Tax=Glycine max RepID=I1K064_SOYBN | SoyBase | E_val: 4.00E-169 | ISS |
| UniRef100_I1K064 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Protein-L-isoaspartate O-methyltransferase n=1 Tax=Glycine max RepID=I1K064_SOYBN | SoyBase | E_val: 4.00E-169 | ISS |
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Glyma05g02810 not represented in the dataset |
Glyma05g02810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g043300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g02810.1 sequence type=CDS gene model=Glyma05g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAATTTGCATCGTTATGGAGTAATCACATCTAGAAAGGTAGCTGAAGTAATGGAAACCATTGATAGAGCTTTGTTTGTACCCAGCGGCGGCGGACTCCAACCTTATGTGGACAGTCCTATGCCGATTGGCTACAATGCCACCATCTCTGCGCCGCATATGCATGCCACCTGCCTTCAGTTGCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCCGTGCTATTGGCGTGGAACATATTCCTGAGTTGGTTTCTTTTTCAATCGAGAATATTCAAAAAAGTGCTGCAGCTCAACCATTGAAAGATGGTTCCCTTTCTGTGCATGCTGGTGATGGAAGGCAAGGTTGGCCTGAGTTTGCTCCTTATGATGCCATTCACGTTGGAGCAGCGGCACCCGAAATCCCCCAACCACTTATTGACCAGTTGAAGCCGGGTGGTAGGATGGTTATTCCTGTTGGAAACATATTTCAAGATTTAAAGGTCGTGGATAAGAACTCCGATGGTTCTATCAGTATCCGGACTGAGACTTCTGTTCGATATGTTCCTCTCACTAGCAAAGAAGCTCAACTGCGAGGTTAG
>Glyma05g02810.1 sequence type=predicted peptide gene model=Glyma05g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQYWSGSAINENKGMVDNLHRYGVITSRKVAEVMETIDRALFVPSGGGLQPYVDSPMPIGYNATISAPHMHATCLQLLEKNLQPGMRVLDVGSGTGYLTACFALMVGPQGRAIGVEHIPELVSFSIENIQKSAAAQPLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQDLKVVDKNSDGSISIRTETSVRYVPLTSKEAQLRG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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