Glyma05g02670 - SoyBase

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Report for Sequence Feature Glyma05g02670

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2029382
stop:	2032264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g02670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20360	AT	Annotation by Michelle Graham. TAIR10: RAB GTPase homolog E1B \| chr4:10990036-10991466 FORWARD LENGTH=476	SoyBase	E_val: 0	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006414	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational elongation	SoyBase	N/A	ISS
GO:0018119	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0460	KOG	Mitochondrial translation elongation factor Tu	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF31	Panther	ELONGATION FACTOR TU (EF-TU)	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_I1K051	UniRef	Annotation by Michelle Graham. Best UniRef hit: Elongation factor Tu n=1 Tax=Glycine max RepID=I1K051_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K051	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor Tu n=1 Tax=Glycine max RepID=I1K051_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g02670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g02670 not represented in the dataset	Glyma05g02670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02670

Paralog	Evidence	Comments
Glyma17g13361	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g041900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g02670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g02670

Limit To All Plant Sequences

>Glyma05g02670.3   sequence type=transcript   gene model=Glyma05g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCATATATATATAGAGGATCCCTCGTTCGCCACCTCCAATGTAAGTGATAAGCGATTTGCTAAGTAAGCTGCTCATATTGTTGAGGTTGATGGTTGAAAAGCGTATGTGCCTCAAGGTTCTCCGTGGGCGATTTGCTAATTGAAGGCAGAAAAGGATAAAACTTAACAAGAGGAGCTGTTTTGTCCACCGCATTCCCAAACCCTTGAACACTATCCTCTTCTCAGTCTCATACACCAAACCAAAAACCTCACTTTCCAATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAGTAAGTTGTTGTGAGATTGGTATCCCAACTACTTGACTCTTACACTGTTAGCAGAGTATCTATCATCGACGATGGGCTTGTGCAATTGAGTTTTGTCATTTTACACAACTGCTGCTATTTTGTTATATTTTGTAGGTTTCTAGATGATGTTTAGTTGAGTTGGACAATGAGTTTCCTATGGCTTGTTTAACTTCCATCTTTTTTATTGTTATGATTCATCTGTTAGAACTTGAGAGCAAGATTCCATAAATTTCTGCTTGCCTGAAATTATGAAATTTGTCTTACAAAGCTGAACTGTGTTTTCTCTATATTACAGTCATGCTATGTTTGGGTGGAGGGTGAGTCACTTCCTTTGTTTGGATGTATGAGGGGAACTCCTTACCCCTTGTTTAGGAGTTGAAGCAAAGGGAATATTAAGTTATTTTCTCTTATTTTAGTTAAACTAAACTACACTCTTTCCCCTATTTAGCCCCCAATGCAATGGGAAAGGTTTTGGTGGGTTTGAGCAGGAATCCCCTATTTGAATTCTTCCAAAAAGGGATTTGGCACACTTTTCCCTTCCATTGTTGTCCCCTTTTCCTTACCATTAATCCAGACCCAGCAATCTTTCTTATAATCTACAATAATGCAACTATTACACTAATGTGGTTACCCCTCTTTTTGTCATTAGATATGTAGAAATAATGTAACTTGGAGACGAGCTCTGGAAACACATGGCTTTCGTCTAAGCAGAGACAAATCGGAGTATATGGAATGTAAGTTCAACAAAAGTAGGAGGGTATCTAACTCAGAGGTGAAAATAGGAGACCATATTATCCCTCAAGTCACACGGTTTAAATATCTTGGGTCTGTAATACAGGATGATGGAGAAATTGAAGGGGATG

Coding sequences of Glyma05g02670

Limit To All Plant Sequences

>Glyma05g02670.2   sequence type=CDS   gene model=Glyma05g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAG

>Glyma05g02670.3   sequence type=CDS   gene model=Glyma05g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAG

Predicted protein sequences of Glyma05g02670

Limit To All Plant Sequences

>Glyma05g02670.2   sequence type=predicted peptide   gene model=Glyma05g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISWAAATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILHLAAANTTTRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDDVPIISGSALLSLEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE*

>Glyma05g02670.3   sequence type=predicted peptide   gene model=Glyma05g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISWAAATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILHLAAANTTTRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDDVPIISGSALLSLEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE*

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