SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56280 | AT | Annotation by Michelle Graham. TAIR10: drought-induced 19 | chr1:21073366-21074725 REVERSE LENGTH=200 | SoyBase | E_val: 2.00E-10 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF05605 | PFAM | Drought induced 19 protein (Di19) | JGI | ISS | |
| UniRef100_I1K047 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K047_SOYBN | SoyBase | E_val: 2.00E-125 | ISS |
| UniRef100_Q5JME8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein DEHYDRATION-INDUCED 19 homolog 5 n=4 Tax=Oryza RepID=DI195_ORYSJ | SoyBase | E_val: 2.00E-12 | ISS |
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Glyma05g02660 not represented in the dataset |
Glyma05g02660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g13350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g041800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g02660.2 sequence type=transcript gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACTTCTAAATAATCATTTCATGGAAAGTTTAATGAAGATGGGTCTCGTGTGTTGGGGTTTGCCGTTTGCTTTCTTTGTAGTCTTGTGGTTACAAATGTTGTTGTTATTAAATTATTAGTAAATGAAAAAAAAGCATTAAAAAAATGCCAAGTGTAAGCCATCATGTTGATCTTTTTGTGTGTCGGAAAAGCATCTAGTATCAGAAGCCAAACATGACTCAGCAAGACTTCGCAACTCCACAAAGCCGGTGGTGATAACACTGATTGGAAAGCAAAGTCTTTTTTTTTTTCCTTTGAGTTAAGACTTGAGACCCCAAAACATTTGCCTCTTTCTCTCCTCTTTGATCATCAGCATCAACTTCTCAAGGCTCAATCAACTTCACCAGTTCTAGTGAAACTGTGAAAGTGCCAGTGTTGTTTTTTTTTTTTAAGAAGCTGACATCATCATGGACTTCGACTTCAGGGCTAGTTTTCATTCTGTCAAACACCTCTCTGCTGTGCAAGCTGCTAGACTTCACTCTGATGTAGATAATGATGGCCGGTTTGATTTCTGATGTCCTTTTTGTGATTTTGAAATTGAAGTTCCTGTGCTCTGCAGCAATTTGGAAGAGGAGCATTGCTCTGCCCTAAAAAATGTGAAAATTTATGTGTCTGCTTGATATGGTGCACTGTCCTGATCTGGATCAAGAAGATAAAGGATCCAGTGGTCCGGCAACCATTATATTTAACAACTGGGAAAAATGAAATAGGGACATTTCTATTTAGGTAAGTAAATCATGATTGAAATCTCTCCAATTTTCTTTTATCAGGTTTGTCCCGTTTGTGAAGAAAATATAGGGAAGGATGCAATCATGCAATTTACACATTCAAGCTCTCGAAGGTGGGCGTGGAAGCCTGAGAAATCTAGCATCTGGCCTGGTAACTCCGCAATGCTTGGCAAGAAGCTGGCCACCAGGGGAAACAAACAAGAATCAATAACTGATCCACTTTTGTCACCATTTATCTGCAACGTGCCTATTCCAAACTCTAACAATTTCCATCCAGATGAAAACTCCAGGTCCAGCAATAAGGATATAGACATTCCTGATGCAAAAAGGACTAGCACATTTGCACCTGATATAGGTGATGAGAAGGATAAACAAGAGAGAAGGCTGAAGGCTGCTTTTGTTCAACAGTTGGTATTCTCAACCATTTTCGAATAAATGTGTTCCTAGAATTTAAAGTCACACAGGGCGTGGATTGGTAGCAGCTTCTTTTCAGATAGCCTCTGATGCTGATTCAAAAAGCACTGAGTTTTATTGTGCTGTATGGGTTTAGGGGATGTGTAGTAGTCTAAGCAATAGCTATATGTATTTAACTATATTTCATATCTTTCAATTAAAATTTGCCTTTTGGGACACTATATATAACTTCGTCAATCTGCTTTACCATATTGATTTCTGCC >Glyma05g02660.5 sequence type=transcript gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACTTCTAAATAATCATTTCATGGAAAGTTTAATGAAGATGGGTCTCGTGTGTTGGGGTTTGCCGTTTGCTTTCTTTGTAGTCTTGTGGTTACAAATGTTGTTGTTATTAAATTATTAGTAAATGAAAAAAAAGCATTAAAAAAATGCCAAGTGTAAGCCATCATGTTGATCTTTTTGTGTGTCGGAAAAGCATCTAGTATCAGAAGCCAAACATGACTCAGCAAGACTTCGCAACTCCACAAAGCCGGTGGTGATAACACTGATTGGAAAGCAAAGTCTTTTTTTTTTTCCTTTGAGTTAAGACTTGAGACCCCAAAACATTTGCCTCTTTCTCTCCTCTTTGATCATCAGCATCAACTTCTCAAGGCTCAATCAACTTCACCAGTTCTAGTGAAACTGTGAAAGTGCCAGTGTTGTTTTTTTTTTTTAAGAAGCTGACATCATCATGGACTTCGACTTCAGGGCTAGTTTTCATTCTGTCAAACACCTCTCTGCTGTGCAAGCTGCTAGACTTCACTCTGATGTAGATAATGATGGCCGGTTTGATTTCTGATGTCCTTTTTGTGATTTTGAAATTGAAGTTCCTGTGCTCTGCAGCAATTTGGAAGAGGAGCATTGCTCTGCCCTAAAAAATGTGGTTTGTCCCGTTTGTGAAGAAAATATAGGGAAGGATGCAATCATGCAATTTACACATTCAAGCTCTCGAAGGTGGGCGTGGAAGCCTGAGAAATCTAGCATCTGGCCTGGTAACTCCGCAATGCTTGGCAAGAAGCTGGCCACCAGGGGAAACAAACAAGAATCAATAACTGATCCACTTTTGTCACCATTTATCTGCAACGTGCCTATTCCAAACTCTAACAATTTCCATCCAGATGAAAACTCCAGGTCCAGCAATAAGGATATAGACATTCCTGATGCAAAAAGGACTAGCACATTTGCACCTGATATAGGTGATGAGAAGGATAAACAAGAGAGAAGGCTGAAGGCTGCTTTTGTTCAACAGTTGGTATTCTCAACCATTTTCGAATAAATGTGTTCCTAGAATTTAAAGTCACACAGGGCGTGGATTGGTAGCAGCTTCTTTTCAGATAGCCTCTGATGCTGATTCAAAAAGCACTGAGTTTTATTGTGCTGTATGGGTTTAGGGGATGTGTAGTAGTCTAAGCAATAGCTATATGTATTTAACTATATTTCATATCTTTCAATTAAAATTTGCCTTTTGGGACACTATATATAACTTCGTCAATCTGCTTTACCATATTGATTTCTGCC
>Glyma05g02660.1 sequence type=CDS gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTCGACTTCAGGGCTAGTTTTCATTCTGTCAAACACCTCTCTGCTGTGCAAGCTGCTAGACTTCACTCTGTTCCTGTGCTCTGCAGCAATTTGGAAGAGGAGCATTGCTCTGCCCTAAAAAATGTGGTTTGTCCCGTTTGTGAAGAAAATATAGGGAAGGATGCAATCATGCAATTTACACATTCAAGCTCTCGAAGGTGGGCGTGGAAGCCTGAGAAATCTAGCATCTGGCCTGGTAACTCCGCAATGCTTGGCAAGAAGCTGGCCACCAGGGGAAACAAACAAGAATCAATAACTGATCCACTTTTGTCACCATTTATCTGCAACGTGCCTATTCCAAACTCTAACAATTTCCATCCAGATGAAAACTCCAGGTCCAGCAATAAGGATATAGACATTCCTGATGCAAAAAGGACTAGCACATTTGCACCTGATATAGGTGATGAGAAGGATAAACAAGAGAGAAGGCTGAAGGCTGCTTTTGTTCAACAGTTGGTATTCTCAACCATTTTCGAATAA >Glyma05g02660.2 sequence type=CDS gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGAAATCTCTCCAATTTTCTTTTATCAGGTTTGTCCCGTTTGTGAAGAAAATATAGGGAAGGATGCAATCATGCAATTTACACATTCAAGCTCTCGAAGGTGGGCGTGGAAGCCTGAGAAATCTAGCATCTGGCCTGGTAACTCCGCAATGCTTGGCAAGAAGCTGGCCACCAGGGGAAACAAACAAGAATCAATAACTGATCCACTTTTGTCACCATTTATCTGCAACGTGCCTATTCCAAACTCTAACAATTTCCATCCAGATGAAAACTCCAGGTCCAGCAATAAGGATATAGACATTCCTGATGCAAAAAGGACTAGCACATTTGCACCTGATATAGGTGATGAGAAGGATAAACAAGAGAGAAGGCTGAAGGCTGCTTTTGTTCAACAGTTGGTATTCTCAACCATTTTCGAATAA >Glyma05g02660.5 sequence type=CDS gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTTACACATTCAAGCTCTCGAAGGTGGGCGTGGAAGCCTGAGAAATCTAGCATCTGGCCTGGTAACTCCGCAATGCTTGGCAAGAAGCTGGCCACCAGGGGAAACAAACAAGAATCAATAACTGATCCACTTTTGTCACCATTTATCTGCAACGTGCCTATTCCAAACTCTAACAATTTCCATCCAGATGAAAACTCCAGGTCCAGCAATAAGGATATAGACATTCCTGATGCAAAAAGGACTAGCACATTTGCACCTGATATAGGTGATGAGAAGGATAAACAAGAGAGAAGGCTGAAGGCTGCTTTTGTTCAACAGTTGGTATTCTCAACCATTTTCGAATAA
>Glyma05g02660.1 sequence type=predicted peptide gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFDFRASFHSVKHLSAVQAARLHSVPVLCSNLEEEHCSALKNVVCPVCEENIGKDAIMQFTHSSSRRWAWKPEKSSIWPGNSAMLGKKLATRGNKQESITDPLLSPFICNVPIPNSNNFHPDENSRSSNKDIDIPDAKRTSTFAPDIGDEKDKQERRLKAAFVQQLVFSTIFE* >Glyma05g02660.2 sequence type=predicted peptide gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIEISPIFFYQVCPVCEENIGKDAIMQFTHSSSRRWAWKPEKSSIWPGNSAMLGKKLATRGNKQESITDPLLSPFICNVPIPNSNNFHPDENSRSSNKDIDIPDAKRTSTFAPDIGDEKDKQERRLKAAFVQQLVFSTIFE* >Glyma05g02660.5 sequence type=predicted peptide gene model=Glyma05g02660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQFTHSSSRRWAWKPEKSSIWPGNSAMLGKKLATRGNKQESITDPLLSPFICNVPIPNSNNFHPDENSRSSNKDIDIPDAKRTSTFAPDIGDEKDKQERRLKAAFVQQLVFSTIFE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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