SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55150 | AT | Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0331 | KOG | ATP-dependent RNA helicase | JGI | ISS | |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF50 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_I1K042 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K042_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5N7W4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase 30 n=2 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ | SoyBase | E_val: 0 | ISS |
|
Glyma05g02590 not represented in the dataset |
Glyma05g02590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g09270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g041000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g02590.2 sequence type=transcript gene model=Glyma05g02590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATGAGTGATTTTTAATAAGTTTTAAATAATCATAAAAAGTGAGAGATCATTAACATTCACTAAGAAAATGTCACAATAAATAATTGGCGCACAAATGCAGGAGAATTGAACGGTGGGGGTGGTGAGAGTAGATTCAATGGAGGTGTGAATAAGTAAAAGAATGGAGTCTCTTTCCGTCATTGTCAAATTGTAGCAAACGTGGGCGCGGCTGTTCCCAACTCCCTCCCTCATATTCATTCATTTCTCCCACCCAAATTCATCGCCCTCCCAATTTGGGAATTTTTCGAAACCCTAAAAAGATGAACCCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAGTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTTGCTCCGGTCCCACCCTTTGTGCCTCCTTCCGGAGGCTTTAATGTAGGTCGAGGCGGTGGCAGAGCGGGCTATGGTCATGTGAGTGATAGAATGGGTCGTAGCGGTGGTGGAAGAGGTCGTGGTGGTGGCGGCGGCGGGGGCGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGCAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTTCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCAGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGAACGATGTGCCGAAGCCTGTAAGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGGGTTTTGCGGAGCCCACCCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTAAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACAAGAGAGTTGGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCCCGGGCAAATAAAAGAAGTACGTGCATCTATGGCGGCGCACCAAAGGGCCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGCTCACCATACCTGAAGGCAAATCAATCCATAAATCAAGTTGTTGAAGTTTTAACAGACATGGAGAAATACAATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACCAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCTTTGTCTGCATTGGTTCGGTCGGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCCTGGCAGTGTCTGTAGTTTTGGTGCTGCTTTGGGCAAATTCTTAGTTTTACAAATGTTGGGGTGTTGAATTTTGAACATGCATGCATTTAACCACAATTACACTTGAAACATCACATTGTTAGATTTTAGGACAAAAATTAATCTTACAACGACTGAAGTCCGGAAAGCATGTGTTATGAATGATTAACATACATTTATCTTATTTTTTCATAGACTTGGTAAGAACAGTAGCTTGATAATAGATGATCAAATATTTTCTTACAGTCTTTATCCTTCATTTGACAAGGGAAGAAGAATGAAAATAGAAGAAAAGAAGATGGAATGAAGAAAAAATAAACAGAATTCTTCATTGTCATTTGGTTTGATTTATCTATGTTATTGTTAACTGTACTATTCACAAACTCTGGTTCTACACTTCTACCCATCAAATATCTACTAAATAAGTTTTTCACAACGAAATATAGTTATGACGGTATTTCTTGGGTAGTTTTCTTGTCTTTCTTTT
>Glyma05g02590.1 sequence type=CDS gene model=Glyma05g02590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAGTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTTGCTCCGGTCCCACCCTTTGTGCCTCCTTCCGGAGGCTTTAATGTAGGTCGAGGCGGTGGCAGAGCGGGCTATGGTCATGTGAGTGATAGAATGGGTCGTAGCGGTGGTGGAAGAGGTCGTGGTGGTGGCGGCGGCGGGGGCGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGCAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTTCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCAGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGAACGATGTGCCGAAGCCTGTAAGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGGGTTTTGCGGAGCCCACCCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTAAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACAAGAGAGTTGGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCCCGGGCAAATAAAAGAAGTACGTGCATCTATGGCGGCGCACCAAAGGGCCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGCTCACCATACCTGAAGGCAAATCAATCCATAAATCAAGTTGTTGAAGTTTTAACAGACATGGAGAAATACAATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACCAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCTTTGTCTGCATTGGTTCGGTCGGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGGAAGAAGAATGAAAATAGAAGAAAAGAAGATGGAATGAAGAAAAAATAA >Glyma05g02590.2 sequence type=CDS gene model=Glyma05g02590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAGTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTTGCTCCGGTCCCACCCTTTGTGCCTCCTTCCGGAGGCTTTAATGTAGGTCGAGGCGGTGGCAGAGCGGGCTATGGTCATGTGAGTGATAGAATGGGTCGTAGCGGTGGTGGAAGAGGTCGTGGTGGTGGCGGCGGCGGGGGCGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGCAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTTCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCAGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGAACGATGTGCCGAAGCCTGTAAGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGGGTTTTGCGGAGCCCACCCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTAAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACAAGAGAGTTGGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCCCGGGCAAATAAAAGAAGTACGTGCATCTATGGCGGCGCACCAAAGGGCCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGCTCACCATACCTGAAGGCAAATCAATCCATAAATCAAGTTGTTGAAGTTTTAACAGACATGGAGAAATACAATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACCAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCTTTGTCTGCATTGGTTCGGTCGGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCCTGGCAGTGTCTGTAG
>Glyma05g02590.1 sequence type=predicted peptide gene model=Glyma05g02590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPYDSRYSDASSFRGRRSDFVGPIPPPSFVGRGGAVSYGVPGPNGFRSAPVAPVPPFVPPSGGFNVGRGGGRAGYGHVSDRMGRSGGGRGRGGGGGGGGRAGAHGFRGSGRGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPYLKANQSINQVVEVLTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLGKKNENRRKEDGMKKK* >Glyma05g02590.2 sequence type=predicted peptide gene model=Glyma05g02590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPYDSRYSDASSFRGRRSDFVGPIPPPSFVGRGGAVSYGVPGPNGFRSAPVAPVPPFVPPSGGFNVGRGGGRAGYGHVSDRMGRSGGGRGRGGGGGGGGRAGAHGFRGSGRGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPYLKANQSINQVVEVLTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLGSKRPWQCL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
