Glyma05g02530 - SoyBase

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Report for Sequence Feature Glyma05g02530

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1902821
stop:	1905265
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g02530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63090	AT	Annotation by Michelle Graham. TAIR10: Lateral organ boundaries (LOB) domain family protein \| chr5:25308723-25309283 REVERSE LENGTH=186	SoyBase	E_val: 2.00E-73	ISS
GO:0010199	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ boundary specification between lateral organs and the meristem	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_I1JXA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongated petiolule 2 n=1 Tax=Glycine max RepID=I1JXA7_SOYBN	SoyBase	E_val: 4.00E-101	ISS
UniRef100_UPI000233A113	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A113 related cluster n=1 Tax=unknown RepID=UPI000233A113	SoyBase	E_val: 1.00E-136	ISS

Expression Patterns of Glyma05g02530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02530

Paralog	Evidence	Comments
Glyma17g09380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g040500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g02530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g02530

Limit To All Plant Sequences

>Glyma05g02530.3   sequence type=transcript   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCCACCCACATTCCTGATAGATATTATTATTGGATGCAAGGTCATAGTTATTCTTTCTAGTCTAACTCCATTTATTACCTTTGTCTTTTGCATCCATTCCTTCTCCATCCACTCAAGCTATTTGCCTTCCCCCCTCTACTACTATCACCTTTTACCACTTAATTATCAGCTTTTCATCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTGTCACTCTCCCCTTGTGACTCACTTTCAATTAGGGTTTCCTCTTTAGGAGTGCTCCATCCTTTAACAAATCTGAGGCTTATACCTCTCGTTGGCTTAGGCTACTTTGTCGAGAGAGAGAAAAAGAGAACAGCTTCTCAAGGACCTCCAACAAGGGAAAAAGGGAAAAATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGAATTAAGTTTGCAGTATTAACCCTTCTAGGGTTTATGCTTTTGGAGGCGTGGCCTGCAATATTCTGATGGCGTGGTGTTATTATATGTATCTATTATGGACTATTGGCTAGCTGTGTAGCCTTAGTTGGACTCTTCTAGTTCTAGCTATGTGCATGACTCTAGCTCTCTACCGTGTCTCTTTAATTTTATTTGTTGCCTTTGATGACTTTGTATTGTTTAAAACTGTAGCCAGGGAGTTAGGTAGTCTTTTTCTTTAGACCCTAAAATAAGTTGGTAGAACATGCATAGTAATGTATGTGGCTACTAGACCTCTTATTGTGTATTGATGCAACTCTAGGCAGCATGTGCAATGTGAAGTTGAATTGACATGTTTCTCTCGGTCATAATGTTTATTTATGATTAAAA

>Glyma05g02530.4   sequence type=transcript   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCCACCCACATTCCTGATAGATATTATTATTGGATGCAAGGTCATAGTTATTCTTTCTAGTCTAACTCCATTTATTACCTTTGTCTTTTGCATCCATTCCTTCTCCATCCACTCAAGCTATTTGCCTTCCCCCCTCTACTACTATCACCTTTTACCACTTAATTATCAGCTTTTCATCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTGTCACTCTCCCCTTGTGACTCACTTTCAATTAGGGTTTCCTCTTTAGGAGTGCTCCATCCTTTAACAAATCTGAGGCTTATACCTCTCGTTGGCTTAGGCTACTTTGTCGAGAGAGAGAAAAAGAGAACAGCTTCTCAAGGACCTCCAACAAGGGAAAAAGGTACTTCCCTTTTAGTTCATCTTATACCAAAGAAACCTACATCAAAAACAGGGAAAAATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGAATTAAGTTTGCAGTATTAACCCTTCTAGGGTTTATGCTTTTGGAGGCGTGGCCTGCAATATTCTGATGGCGTGGTGTTATTATATGTATCTATTATGGACTATTGGCTAGCTGTGTAGCCTTAGTTGGACTCTTCTAGTTCTAGCTATGTGCATGACTCTAGCTCTCTACCGTGTCTCTTTAATTTTATTTGTTGCCTTTGATGACTTTGTATTGTTTAAAACTGTAGCCAGGGAGTTAGGTAGTCTTTTTCTTTAGACCCTAAAATAAGTTGGTAGAACATGCATAGTAATGTATGTGGCTACTAGACCTCTTATTGTGTATTGATGCAACTCTAGGCAGCATGTGCAATGTGAAGTTGAATTGACATGTTTCTCTCGGTCATAATGTTTATTTATGATTAAAA

Coding sequences of Glyma05g02530

Limit To All Plant Sequences

>Glyma05g02530.2   sequence type=CDS   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGA

>Glyma05g02530.3   sequence type=CDS   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGA

>Glyma05g02530.4   sequence type=CDS   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGA

Predicted protein sequences of Glyma05g02530

Limit To All Plant Sequences

>Glyma05g02530.2   sequence type=predicted peptide   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPTSLSVPPGLASFHQVPQRQFSARFGNEASGFYRHQSAATAFSFPYALPWTDTSSEDISEGAGAGGGNL*

>Glyma05g02530.3   sequence type=predicted peptide   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPTSLSVPPGLASFHQVPQRQFSARFGNEASGFYRHQSAATAFSFPYALPWTDTSSEDISEGAGAGGGNL*

>Glyma05g02530.4   sequence type=predicted peptide   gene model=Glyma05g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPTSLSVPPGLASFHQVPQRQFSARFGNEASGFYRHQSAATAFSFPYALPWTDTSSEDISEGAGAGGGNL*

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