Glyma05g02460 - SoyBase

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Report for Sequence Feature Glyma05g02460

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1804377
stop:	1808375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g02460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50150	AT	Annotation by Michelle Graham. TAIR10: Protein of Unknown Function (DUF239) \| chr5:20402444-20406375 REVERSE LENGTH=420	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03080	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_G7J4W2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl-terminal proteinase n=1 Tax=Medicago truncatula RepID=G7J4W2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339F95	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339F95 related cluster n=1 Tax=unknown RepID=UPI0002339F95	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g02460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02460

Paralog	Evidence	Comments
Glyma17g09450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g039800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g02460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g02460

Limit To All Plant Sequences

>Glyma05g02460.1   sequence type=CDS   gene model=Glyma05g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATGAAGAAGGGATATTCAGTTTCCTTGACAAAACAACAACATAAGAAAGAGCCATTTTTTGCAGTTCATCACACAAGAAAACAACACCAATGCATCCAAGCAAATCATGATGCCACAGAAGAAACAAGCTCACAGCAAAATCAATATTCCCTCAAATTGGCTCTTTCTTCCACTTCCCAAAATACTACTCTACTACTGCCTGCTTTTGTTACTTTGCTGCTACTTGTTACCTCAATTGGCACAGCATTCTCTCACCCCACCATTGTCTCCAATTCTTCTTCACCTTTGCCACCAGCACTCTCTCACTCCAATGCTAATAACCAAACTTTGAGACCTGCTGCAGTGCTGCAAAAGTTGAGGAGAATCAGAACTCATCTCGACAAGATCAACAAGCCTGCTGTTAAAACAATCAAGAGTCCAGATGGGGATTTGATTGATTGTGTTTTGTCTCATCAGCAACCTGCGTTTGATCATCCTCAGCTCAAAGGGCAAAGACCATTGGATCCACCAGAAAGGCCAAAGGGACACACCAATGGAGAAACAGTCGTAGAGAGCTTTCAGCTTTGGACTGATTCTGGTGAAGCATGCCCTGAAGGAACTGTTCCAATCAGAAGAACAACTGAACAAGATTTTCTACGAGCAAGCTCTGTTAGAAGATTTGGAAGAAAACCAAGAAATGTACGGAGGGACTCAACAGGCATTGGTCATGAGCATGCAGTTGTTTCTGTAAATGGAGATCAATACTTTGGAGCAAAAGCAAGCATAAACGTGTGGACGCCTAGCGTAACTGATCCATACGAATTCAGTTTGTCACAGATATGGGTTATTGCTGGATCGTTTGGTAATGATCTAAATACCATAGAAGCTGGATGGCAGGTAAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAACGGATGCATATCAAGCAACAGGATGCTACAACTTACTATGTTCAGGATTTGTCCAAACCAACAACAGAATAGCAATAGGGGCTGCAATCTCACCAAGATCCATCTATAATGGCAGACAATTTGATATTGGATTAATGGTTTGGAAGGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTACTAGTTGGGTACTGGCCAGCATACTTGTTCAGTCACTTGAGAAACCATGCAAGCATGGTGCAATTTGGAGGGGAAATTGTGAATTCTCGTTCAAGGGGCTACCACACTGGCACTCAAATGGGTAGTGGCCATTTTGCTGGAGAAGGGTTTAGAAAAGCAGCATATTTTAGAAACTTACAAGTTGTTGATTGGGACAATAATTTGCTTCCTCTATCAAATATTCACCAGTTGGCTGACCATTCCAATTGCTATGACATAAGGGTGGGATCAAACAATGTTTGGGGAACTTACTTTTATTATGGAGGTCCTGGAAGGAATGTGAGATGTCCATGA

Predicted protein sequences of Glyma05g02460

Limit To All Plant Sequences

>Glyma05g02460.1   sequence type=predicted peptide   gene model=Glyma05g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMKKGYSVSLTKQQHKKEPFFAVHHTRKQHQCIQANHDATEETSSQQNQYSLKLALSSTSQNTTLLLPAFVTLLLLVTSIGTAFSHPTIVSNSSSPLPPALSHSNANNQTLRPAAVLQKLRRIRTHLDKINKPAVKTIKSPDGDLIDCVLSHQQPAFDHPQLKGQRPLDPPERPKGHTNGETVVESFQLWTDSGEACPEGTVPIRRTTEQDFLRASSVRRFGRKPRNVRRDSTGIGHEHAVVSVNGDQYFGAKASINVWTPSVTDPYEFSLSQIWVIAGSFGNDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSIYNGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRNHASMVQFGGEIVNSRSRGYHTGTQMGSGHFAGEGFRKAAYFRNLQVVDWDNNLLPLSNIHQLADHSNCYDIRVGSNNVWGTYFYYGGPGRNVRCP*

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