SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63060 | AT | Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr5:25295082-25296714 REVERSE LENGTH=263 | SoyBase | E_val: 3.00E-114 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG1470 | KOG | Phosphatidylinositol transfer protein PDR16 and related proteins | JGI | ISS | |
| PTHR10174 | Panther | RETINALDEHYDE BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR10174:SF70 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00650 | PFAM | CRAL/TRIO domain | JGI | ISS | |
| UniRef100_B9RAY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9RAY5_RICCO | SoyBase | E_val: 2.00E-124 | ISS |
| UniRef100_I1MTF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MTF1_SOYBN | SoyBase | E_val: 5.00E-150 | ISS |
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Glyma05g02420 not represented in the dataset |
Glyma05g02420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g09490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g039500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g02420.2 sequence type=CDS gene model=Glyma05g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTCATGCGAACTGTGTACCCAACCACCGCTGTTCCTCTTCCTCTTTCAAACCTTCCCGTTAGGACCAATTTCGCCGTTCGGTGTTCCAACGTTCACTCGCAACCGCAGCTCGACTCGCGCAAGTTAGTTCTTGCAGTGAAGGAAAAGCTTGAAAAAGAACATCATAGTCTCCCTGTTGGCAGAAATGGAAGGGATGACGAAGATATGATACTGTGGTTTCTCAAAGATCGCAAGTTTTCTGTTGATGATGCTATTTACAAGTTGACTAAAGCCATTAAATGGCGTCAAGATTTTGAGGTGTCTAAATTAACTGAAGAAGTCGTGAAAGATGCTCTTCAAACTGGAAAAGGATATGTACATGACTTTCTAGATATCAATGGCCAACCCGTGCTCGTGGTGGTTGGATCAAAGCATATTCCTCAAGCACTGGACCCTGCAGACGACGAGAGGCTCTGTGTTTTCTTAATTGAGAAGGCATTGAGTAAGTTTCCAACTGGGAAAGAACAAATACTTACAATAGTTGATCTCAGAGGTTTCAGTACAGAAAATGCTGATCTTAAATTCTTGACATTCTTGTTCGATATATTCTACTATTACTATCCCAAGCGATTGGCTCAAGTCCTATTTGTAGATGCACCTTTTGTTTTTAAGCCAATTTGGCAGCTAGTCAAGCCCATGTTAAAATCATATGCTTCTCTGGTGAGATTTTGCTCTGCAGAGACTGTTAGGAAGGAATATTTCACAGACGAAACTTTGCCACCAAGCTTCAGAGATTGA
>Glyma05g02420.2 sequence type=predicted peptide gene model=Glyma05g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELMRTVYPTTAVPLPLSNLPVRTNFAVRCSNVHSQPQLDSRKLVLAVKEKLEKEHHSLPVGRNGRDDEDMILWFLKDRKFSVDDAIYKLTKAIKWRQDFEVSKLTEEVVKDALQTGKGYVHDFLDINGQPVLVVVGSKHIPQALDPADDERLCVFLIEKALSKFPTGKEQILTIVDLRGFSTENADLKFLTFLFDIFYYYYPKRLAQVLFVDAPFVFKPIWQLVKPMLKSYASLVRFCSAETVRKEYFTDETLPPSFRD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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