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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66540 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 ( | SoyBase | E_val: 4.00E-159 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2600 | KOG | U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p | JGI | ISS | |
| PTHR17039 | Panther | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 | JGI | ISS | |
| PF04006 | PFAM | Mpp10 protein | JGI | ISS | |
| UniRef100_I1K017 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K017_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FJY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g66540/K1F13_21 n=1 Tax=Arabidopsis thaliana RepID=Q9FJY5_ARATH | SoyBase | E_val: 2.00E-156 | ISS |
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Glyma05g02340 not represented in the dataset |
Glyma05g02340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g09590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g038800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g02340.1 sequence type=CDS gene model=Glyma05g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAACACTAGCGATGCTGGCGTCGAGGCCCTACGGCGGCTGAAAGCGACCGAACCACCGTTGTTCCTCGCTCCCAACCCGGCGCTGTCGGAAGCTGCTCGTACTGCGTCGCAATACTTGTTCTCTTCCCTGAATCCATTTTCCCCAAAATCGCCACTGGACCAACTCCTCGTGGACGGTTTCGACGCCGAACAGATATGGCAACAAATCGACCTCCAAACGCAGCCTCTATTATCCACCCTTCGCCGCCGCGTGAAGCAGCTGGTCGAAAATCCCGAAGAGATTTCCCAGCTGAAGGTTCCTTCGGAGGGTGGGAATAAGAAGGAGGAAAATATTCTAGACGAGTGGGAAGAAGAGAGTGACGGTTTTGACGAGGAATTGGATGAGGAAGAGGAAGAAGATGAGGAGGATGAAGAAAAGGAGGGAGAAGGAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAGATGGAGGATGAAGAGGAAGAAGAAGAGAATGAGGAAGGTGGTGGCATTGAAGATAAATTCTTGAAAATAGATGAATTGACAAAGTACTTAGAGAAGGAGGAAGAGGATTTCGAGAATGGCGAGGCAGACAGAGAAGGTGAGGAGGAAGACGATGACGAAGGGGAAAGTGATGAGGAAGGTGATTTTGGGATTGGTGATGATGATGATGAAGATGAAGATGAAGAAACAGAGGGCATAGAAAATGCAAGGTATGAAGACTTCTTTGGAGGTAAAAAGGAAAGGGGGTCAAAAAGAAAAGCTCAAGCACTTCAGGAATCTGATTATTCTGATGAAGATGACATGGAATTGGACAAGCAGACGAAAGGGACTGCATCTGCCCATGAAAAGCAACTGGAAAAGATTCAGTCCAAGATAGAGCAGATGGAGAAAGCTAACATAGAGCAAAAAGCATGGACTATGCAGGGTGAGGTAACTGCTGCAAAGAGACCCAAGAATAGTGCATTGGAGGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGGGGCATTTTAATGATGTTCAAAGGGTTCCTAAATTGCCACCTAAAGGGCCTCGGGAAGTTAAAGAGTTGGATGATAATAAAAGCAAGCAGGGTCTTGCAGAAATTTACGAGCAAGAATATGTTCAGAAGACAGATCCCACTTCTGCTCCGTTGTTATTCAAAGATGAACAAAAGAATGAGGCAAGCATGCTGTTTAAGAGACTCTGTCTGAAGCTGGATGCCCTTTCTCATTTTAACTTTGCTCCAAAACCTGTTATAGAGGACATGTCTATTCAAGCTAATGTGCCTGCTTTGGCAATGGAAGAAATTGCACCTGTGGCTGTTTCAGATGCTGCTATGTTGGCTCCTGAGGAGGTATTTGATGGCAAGGGTGATATTAAGGAAGAAACAGAACTTACAAAGGCAGAAAGGAAAAGAAGGAGAGCTAATAAGAAAAGAAAATTTAAAGCTGTGGCAGTAAAAAGGACGAATAAGAAGGCACAAGAAGGTGCAATTCGTAGACAAGTTAATGGGTAA
>Glyma05g02340.1 sequence type=predicted peptide gene model=Glyma05g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANTSDAGVEALRRLKATEPPLFLAPNPALSEAARTASQYLFSSLNPFSPKSPLDQLLVDGFDAEQIWQQIDLQTQPLLSTLRRRVKQLVENPEEISQLKVPSEGGNKKEENILDEWEEESDGFDEELDEEEEEDEEDEEKEGEGEEDEEEEEEEEMEDEEEEEENEEGGGIEDKFLKIDELTKYLEKEEEDFENGEADREGEEEDDDEGESDEEGDFGIGDDDDEDEDEETEGIENARYEDFFGGKKERGSKRKAQALQESDYSDEDDMELDKQTKGTASAHEKQLEKIQSKIEQMEKANIEQKAWTMQGEVTAAKRPKNSALEVDLDFEHNVRPAPVITEEVTASIEDIIKKRIIEGHFNDVQRVPKLPPKGPREVKELDDNKSKQGLAEIYEQEYVQKTDPTSAPLLFKDEQKNEASMLFKRLCLKLDALSHFNFAPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFDGKGDIKEETELTKAERKRRRANKKRKFKAVAVKRTNKKAQEGAIRRQVNG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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