Glyma05g02320 - SoyBase

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Report for Sequence Feature Glyma05g02320

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1707924
stop:	1712278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g02320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR14289	Panther	F-BOX ONLY PROTEIN 3	JGI		ISS
PTHR14289:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02151	PFAM	UvrB/uvrC motif	JGI		ISS
PF04379	PFAM	Protein of unknown function (DUF525)	JGI		ISS
UniRef100_B8Q896	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SKIP interacting protein 10 (Fragment) n=1 Tax=Oryza sativa Indica Group RepID=B8Q896_ORYSI	SoyBase	E_val: 2.00E-121	ISS
UniRef100_UPI0001B837D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B837D9 related cluster n=1 Tax=unknown RepID=UPI0001B837D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g02320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02320

Paralog	Evidence	Comments
Glyma17g09620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g038600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g02320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g02320

Limit To All Plant Sequences

>Glyma05g02320.1   sequence type=CDS   gene model=Glyma05g02320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCCTTATCGTTAAGTATGAGTCTGAGGAGTAGTAGTTTAGCGAATTTTCTGTTGCTGAGTTCAGAGACGAGAGTGAGAAGAAGAAGAAGGAGTGTCATCGTAGCGTGTGCTTTGGAGGGAGACAGTGGTAGCAGTAGCACAAGCTCCTTTCTCTCTCGGACCCAAACCTACGCCCTTCTTAAGCAACAATTGCAAGTGGCTGCTAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGACTCGTTGAAGCAATTTGAGGACGAGGAGCCTGTTTTGCGTCTGAGGAGACTATTGAAGGAAGCAATTGCTGAAGAGAGATTCCAGGATGCTGCTAGTTACCGTGATGAGCTAAACAATATTGCCCCACACTCTCTTTTAAAATGTTGCAGCGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGCTATACTTCTTTGCATATAGAATAAGAATTACCAATAACTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCTAATGGGAGAACGGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCATTAATACTTCCTGGAAATAGTTTTGAATACTCTTCAGCATGCCCACTGAACACACCAAATGGTAGAATGGAAGGTGATTATGAGATGATCCATTTTGAAAGAGTAGGCTCACGATCATTCAATGTGGCCATTGCCCCGTTTTCTCTCTCTCTGCTTGGAGATGATGAAGGTTGTGTTATTTGA

Predicted protein sequences of Glyma05g02320

Limit To All Plant Sequences

>Glyma05g02320.1   sequence type=predicted peptide   gene model=Glyma05g02320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSLSLSMSLRSSSLANFLLLSSETRVRRRRRSVIVACALEGDSGSSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKQFEDEEPVLRLRRLLKEAIAEERFQDAASYRDELNNIAPHSLLKCCSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGRTENVWGIGVVGEQPLILPGNSFEYSSACPLNTPNGRMEGDYEMIHFERVGSRSFNVAIAPFSLSLLGDDEGCVI*

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