Glyma05g02280 - SoyBase

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Report for Sequence Feature Glyma05g02280

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1678811
stop:	1684980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g02280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62270	AT	Annotation by Michelle Graham. TAIR10: HCO3- transporter family \| chr3:23042528-23045633 REVERSE LENGTH=703	SoyBase	E_val: 0	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005452	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic anion exchanger activity	SoyBase	N/A	ISS
GO:0015301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: anion:anion antiporter activity	SoyBase	N/A	ISS
PTHR11453	Panther	ANION EXCHANGE PROTEIN	JGI		ISS
PTHR11453:SF6	Panther	ANION EXCHANGE PROTEIN-RELATED	JGI		ISS
PF00955	PFAM	HCO3- transporter family	JGI		ISS
UniRef100_G7J5E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Boron transporter n=1 Tax=Medicago truncatula RepID=G7J5E8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K011	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K011_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g02280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g02280 not represented in the dataset	Glyma05g02280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02280

Paralog	Evidence	Comments
Glyma17g09660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g038300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g02280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g02280

Limit To All Plant Sequences

>Glyma05g02280.2   sequence type=transcript   gene model=Glyma05g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCTTATCGCTACTTCCACTTCGATTTTCATTCAGGAATCAAAACTATATATGCATGAGATTGCTTAATACACATTCTCACATGTCACACAAAAGTCTTCAAATTGCAGCGTGCGTTTCTTTGCGTACTTCCTAGTTCCTAGTTACTCATGCTTTGCTCGTTCACTGCCTCGGAAACTGTTAACTCTCTCTCCTAAAGTGCTTTCAATTACAGTCTTAGAGTGCGTGTCTGAATCTTATTTACCTTAACCTCTTCACTTCTTTATTAGTACTACATCACTTTAATGTAACTGCAATCTTTTTTTCTTGTCAAAAGAAAAAGCTTTTTTGATAACATTTCTCTTTCCATTTAATGTCCAACTTGTCACAAGTATTCTGAACCATTCCCATCATGGTTTCAGTCATGGAATTTCGTTAATCTTGCCACATAAACCCATCTGAGTCTAGCTCTGTTTGTGTTCTGTCTCAAGCGTTTGTGAGTTGTAACTAATGCAGCTTGCAATGATGGGTTTCCGTTAATTTGTTTGTATTGTTCTCAAAGGCTATACCTTTAGAACTTAAATTTCAGTTTGAATGTAACAAGTGTGTCAAACTGCCATGTAACCGGAACGTTTCAGTTGGGGTTGCTCACGTTTGTTCTCTCAGAATGATGATTATATGGAAGGTTTCTGTGGTAAGAAAGTGAAAGAGTTTTTTTTTGGATCTTGGCTTTGTCATGGTTGAACTCTACTCTTCATTTTCAGCTTATAAGAGTGTTTGTTTTTCTGGCTTGGTAACTGAAAACAAAATTCTCTTATACTCTTGAATTCCACCTACCCGGGAGTTTTTTTCATTCTTTTGCTAACTTAACTCATTCTTTGGTCATTCATAACAATATATCTAAAACATTTTCGTTGTAATTACAAATGTGAATTCATCGTCCGGATTCGTTTATTCGTTTTCTGGCCTGATGTGCTTCTACATCCAAAAGATGGACATCCATTTTTTCCTGCTGTCCTATTTAGGAAGATTAAGGCATGTAGGTTTATCTTCTCCCTGCTCAAAGTTTGGTTATGGATACTTTAACTAAGCAACTTTAATCATAATTTTCCTCTAGAGTCCCTTGAAGTGATTCACCATCTTCCATTCATATCTTCTGCTCCATTTTTCTATAAACAAAAACTTAGACCAGTATTCATCCCTTGATATTCTAATACCTTCATGGAAGAAACATTTGTTCCCTTACGTGGGATCAAGAATGACCTCAAAGGAAGACTTGTGTGCTACAAACAAGATTGGACTAGTGGATTCCGGGCAGGCATCAGGATCCTGGCCCCAACTACATATATATTTTTTGCTTCAGCAATTCCAGTTATCTCTTTTGGGGAGCAACTAGAGAGAAATACAGATGGAACTCTAACTGCAGTGCAGACCCTTGCATCAACCGCACTATGTGGCATTATCCATTCAGTCTTAGGAGGGCAGCCCCTCCTCATACTAGGCGTAGCCGAGCCAACAGTTCTGATGTATACATTCCTGTATGACTTCGCAAAAGGTAGAAAGGATTTGGGGCACAAACTATTCCTGCCTTGGACTGGATGGGTGTGTGTTTGGACCGCCGTGTTGCTCTTCTTGCTGGCCATTCTTGGTGCATGCTCCATAATCAACAGATTCACACGCCTTGCAGGTGAACTATTTGGTCTGCTAATAGCAATGCTCTTTATGCAGCAGGCTATAAGGGGACTAGTGGAAGAGTTTGGTGTGCCCCAGTCCCAGAGAGAAGGTACCAATCAGATTGCACTCCAATCCTCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGCCTGCTGTTTACTGCACTTAGAAGCCGTAAGGCTAGATCCTGGCGATATGGGGCAGGATGGTTGCGGGGATTTGTAGCTGATTATGGAGTCCCACTATTGATTCTTGTGTGGACTGCTGTGTCTTATATACCAACCAATAAGGTTCCGATGGGAATCCCTAGGCGACTTTTCAGTCCAAATCCATGGTCTCCTGGTGCACACTCAAATTGGACTGTAATTAAGGAAATGTTGAATGTGCCTCTCATCTATATTATTGGAGCATTTATACCGGCAACTATGATTGCCGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCCCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCTTCTTATCATTATGACCTTCTCCTCTTGGGCTTCTTGACCATATTGTGTGGACTTATTGGAATCCCTCCATCCAACGGCGTGATTCCCCAATCTCCAATGCATACTAAAAGCTTAGCTACTCTAAAACATCAGCTCTTGCGCAATAAGCTTGTATCTGTTGCACGAAAAAGCAAGCAGAAAAATACGAACCTGTGTCAGTTATACCGAAGTATGCAAGAAGCATATGATCAAATGCAGACTCCATTAGCCCGCCAAATACCACCTGCCTTGGGGCTAAAGGAGCTGAAGGAATCCACCATCCAACTGGCTTCAAGTCATGGATACATTGATTCCCCTGTTGATGAGACTGTTTTCGATGTGGATAACGATGTTGATGACCTTCTGCCAGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTGCTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCTCTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGTTACTTTGCTTTTATGGCAATTGAAAGCTTGCCCGGAAATCAGTTTTGGGAGAGAATATTATATCTTTTCACTGCTCCAAGTCGAAGATACAAAGTGCTGGAGAAACAGCATGCAGCCTTAATTGAGACCGTGCCCTTCAAAACGGTTGCCATGTTTACCTTATTCCAGACAGCTTACTTGCTTCTCTGCTTTGGTCTAACCTGGATACCAATTGCTGGGGTCCTTTTCCCATTGTTAATCATGCTTCTTATCCCAGTACGCCAATATTTCCTTCCCAAGTTTTTTAAAGGAGCCCATCTTCAAGAATTGGATGCTGCAGCATACGAGGAAGCACCTGCTATTAGTTTCAACTTGTCATTCGATGTAGGATTCAGGAAGTCAGACAACAACAGTCAATAATAATAGTGGGGAAATTCTTGACGAAATTATTACAAGGAGTCGTGGGGAGATCTGCCTCAATCAAAAATCAAGGTGTTCAACTCCAAAATCATGTGAAGACACTGTACCTGCTTATGGAAATATCTCAAAGGATTCACAGCTCTCGAGTAACTAAATTCAGAAGGAAAAGCAGCCTAGGATCAAATCATGATCATGGAGGCGATCAAGTTCAAGAAGAGTGCTAGTCCACAGCCAAAATTTCTTGGACAATATTCCAATGGCTTACCTTCAAGCTAATATGGCATCCTTAAGTCTGATGAAAATAGTTTTAAGTAGTTCACTAGAGGTCGTGAACTTGGTTTATGTAACAGAAGTCATTTTATAGATGTTTTTGTCTTTGACTCTTCTTCCTTTCAATATTTAACCATATTGATTACATACCTTAATACAAAATGAGCAGGGGTATTTTCAAGTTCATGGATAGATGGCATTGAATCTAACTGTCTTAGGTTTATTTATGTGTAGTTTATATGTAATGAACCGCAAAAAA

Coding sequences of Glyma05g02280

Limit To All Plant Sequences

>Glyma05g02280.1   sequence type=CDS   gene model=Glyma05g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAACATTTGTTCCCTTACGTGGGATCAAGAATGACCTCAAAGGAAGACTTGTGTGCTACAAACAAGATTGGACTAGTGGATTCCGGGCAGGCATCAGGATCCTGGCCCCAACTACATATATATTTTTTGCTTCAGCAATTCCAGTTATCTCTTTTGGGGAGCAACTAGAGAGAAATACAGATGGAACTCTAACTGCAGTGCAGACCCTTGCATCAACCGCACTATGTGGCATTATCCATTCAGTCTTAGGAGGGCAGCCCCTCCTCATACTAGGCGTAGCCGAGCCAACAGTTCTGATGTATACATTCCTGTATGACTTCGCAAAAGGTAGAAAGGATTTGGGGCACAAACTATTCCTGCCTTGGACTGGATGGGTGTGTGTTTGGACCGCCGTGTTGCTCTTCTTGCTGGCCATTCTTGGTGCATGCTCCATAATCAACAGATTCACACGCCTTGCAGGTGAACTATTTGGTCTGCTAATAGCAATGCTCTTTATGCAGCAGGCTATAAGGGGACTAGTGGAAGAGTTTGGTGTGCCCCAGTCCCAGAGAGAAGGTACCAATCAGATTGCACTCCAATCCTCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGCCTGCTGTTTACTGCACTTAGAAGCCGTAAGGCTAGATCCTGGCGATATGGGGCAGGATGGTTGCGGGGATTTGTAGCTGATTATGGAGTCCCACTATTGATTCTTGTGTGGACTGCTGTGTCTTATATACCAACCAATAAGGTTCCGATGGGAATCCCTAGGCGACTTTTCAGTCCAAATCCATGGTCTCCTGGTGCACACTCAAATTGGACTGTAATTAAGGAAATGTTGAATGTGCCTCTCATCTATATTATTGGAGCATTTATACCGGCAACTATGATTGCCGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCCCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCTTCTTATCATTATGACCTTCTCCTCTTGGGCTTCTTGACCATATTGTGTGGACTTATTGGAATCCCTCCATCCAACGGCGTGATTCCCCAATCTCCAATGCATACTAAAAGCTTAGCTACTCTAAAACATCAGCTCTTGCGCAATAAGCTTGTATCTGTTGCACGAAAAAGCAAGCAGAAAAATACGAACCTGTGTCAGTTATACCGAAGTATGCAAGAAGCATATGATCAAATGCAGACTCCATTAGCCCGCCAAATACCACCTGCCTTGGGGCTAAAGGAGCTGAAGGAATCCACCATCCAACTGGCTTCAAGTCATGGATACATTGATTCCCCTGTTGATGAGACTGTTTTCGATGTGGATAACGATGTTGATGACCTTCTGCCAGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTGCTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCTCTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGTTACTTTGCTTTTATGGCAATTGAAAGCTTGCCCGGAAATCAGTTTTGGGAGAGAATATTATATCTTTTCACTGCTCCAAGTCGAAGATACAAAGTGCTGGAGAAACAGCATGCAGCCTTAATTGAGACCGTGCCCTTCAAAACGGTTGCCATGTTTACCTTATTCCAGACAGCTTACTTGCTTCTCTGCTTTGGTCTAACCTGGATACCAATTGCTGGGGTCCTTTTCCCATTGTTAATCATGCTTCTTATCCCAGTACGCCAATATTTCCTTCCCAAGTTTTTTAAAGGAGCCCATCTTCAAGAATTGGATGCTGCAGCATACGAGGAAGCACCTGCTATTAGTTTCAACTTGTCATTCGATGATTCAGGAAGTCAGACAACAACAGTCAATAATAATAGTGGGGAAATTCTTGACGAAATTATTACAAGGAGTCGTGGGGAGATCTGCCTCAATCAAAAATCAAGGTGTTCAACTCCAAAATCATGTGAAGACACTGTACCTGCTTATGGAAATATCTCAAAGGATTCACAGCTCTCGAGTAACTAA

>Glyma05g02280.2   sequence type=CDS   gene model=Glyma05g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAACATTTGTTCCCTTACGTGGGATCAAGAATGACCTCAAAGGAAGACTTGTGTGCTACAAACAAGATTGGACTAGTGGATTCCGGGCAGGCATCAGGATCCTGGCCCCAACTACATATATATTTTTTGCTTCAGCAATTCCAGTTATCTCTTTTGGGGAGCAACTAGAGAGAAATACAGATGGAACTCTAACTGCAGTGCAGACCCTTGCATCAACCGCACTATGTGGCATTATCCATTCAGTCTTAGGAGGGCAGCCCCTCCTCATACTAGGCGTAGCCGAGCCAACAGTTCTGATGTATACATTCCTGTATGACTTCGCAAAAGGTAGAAAGGATTTGGGGCACAAACTATTCCTGCCTTGGACTGGATGGGTGTGTGTTTGGACCGCCGTGTTGCTCTTCTTGCTGGCCATTCTTGGTGCATGCTCCATAATCAACAGATTCACACGCCTTGCAGGTGAACTATTTGGTCTGCTAATAGCAATGCTCTTTATGCAGCAGGCTATAAGGGGACTAGTGGAAGAGTTTGGTGTGCCCCAGTCCCAGAGAGAAGGTACCAATCAGATTGCACTCCAATCCTCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGCCTGCTGTTTACTGCACTTAGAAGCCGTAAGGCTAGATCCTGGCGATATGGGGCAGGATGGTTGCGGGGATTTGTAGCTGATTATGGAGTCCCACTATTGATTCTTGTGTGGACTGCTGTGTCTTATATACCAACCAATAAGGTTCCGATGGGAATCCCTAGGCGACTTTTCAGTCCAAATCCATGGTCTCCTGGTGCACACTCAAATTGGACTGTAATTAAGGAAATGTTGAATGTGCCTCTCATCTATATTATTGGAGCATTTATACCGGCAACTATGATTGCCGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCCCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCTTCTTATCATTATGACCTTCTCCTCTTGGGCTTCTTGACCATATTGTGTGGACTTATTGGAATCCCTCCATCCAACGGCGTGATTCCCCAATCTCCAATGCATACTAAAAGCTTAGCTACTCTAAAACATCAGCTCTTGCGCAATAAGCTTGTATCTGTTGCACGAAAAAGCAAGCAGAAAAATACGAACCTGTGTCAGTTATACCGAAGTATGCAAGAAGCATATGATCAAATGCAGACTCCATTAGCCCGCCAAATACCACCTGCCTTGGGGCTAAAGGAGCTGAAGGAATCCACCATCCAACTGGCTTCAAGTCATGGATACATTGATTCCCCTGTTGATGAGACTGTTTTCGATGTGGATAACGATGTTGATGACCTTCTGCCAGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTGCTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCTCTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGTTACTTTGCTTTTATGGCAATTGAAAGCTTGCCCGGAAATCAGTTTTGGGAGAGAATATTATATCTTTTCACTGCTCCAAGTCGAAGATACAAAGTGCTGGAGAAACAGCATGCAGCCTTAATTGAGACCGTGCCCTTCAAAACGGTTGCCATGTTTACCTTATTCCAGACAGCTTACTTGCTTCTCTGCTTTGGTCTAACCTGGATACCAATTGCTGGGGTCCTTTTCCCATTGTTAATCATGCTTCTTATCCCAGTACGCCAATATTTCCTTCCCAAGTTTTTTAAAGGAGCCCATCTTCAAGAATTGGATGCTGCAGCATACGAGGAAGCACCTGCTATTAGTTTCAACTTGTCATTCGATGTAGGATTCAGGAAGTCAGACAACAACAGTCAATAA

Predicted protein sequences of Glyma05g02280

Limit To All Plant Sequences

>Glyma05g02280.1   sequence type=predicted peptide   gene model=Glyma05g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETFVPLRGIKNDLKGRLVCYKQDWTSGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTDGTLTAVQTLASTALCGIIHSVLGGQPLLILGVAEPTVLMYTFLYDFAKGRKDLGHKLFLPWTGWVCVWTAVLLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQQAIRGLVEEFGVPQSQREGTNQIALQSSWLFGNGMFALVLSFGLLFTALRSRKARSWRYGAGWLRGFVADYGVPLLILVWTAVSYIPTNKVPMGIPRRLFSPNPWSPGAHSNWTVIKEMLNVPLIYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSVARKSKQKNTNLCQLYRSMQEAYDQMQTPLARQIPPALGLKELKESTIQLASSHGYIDSPVDETVFDVDNDVDDLLPVEVKEQRLSNLLQALMVAACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKVLEKQHAALIETVPFKTVAMFTLFQTAYLLLCFGLTWIPIAGVLFPLLIMLLIPVRQYFLPKFFKGAHLQELDAAAYEEAPAISFNLSFDDSGSQTTTVNNNSGEILDEIITRSRGEICLNQKSRCSTPKSCEDTVPAYGNISKDSQLSSN*

>Glyma05g02280.2   sequence type=predicted peptide   gene model=Glyma05g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETFVPLRGIKNDLKGRLVCYKQDWTSGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTDGTLTAVQTLASTALCGIIHSVLGGQPLLILGVAEPTVLMYTFLYDFAKGRKDLGHKLFLPWTGWVCVWTAVLLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQQAIRGLVEEFGVPQSQREGTNQIALQSSWLFGNGMFALVLSFGLLFTALRSRKARSWRYGAGWLRGFVADYGVPLLILVWTAVSYIPTNKVPMGIPRRLFSPNPWSPGAHSNWTVIKEMLNVPLIYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSVARKSKQKNTNLCQLYRSMQEAYDQMQTPLARQIPPALGLKELKESTIQLASSHGYIDSPVDETVFDVDNDVDDLLPVEVKEQRLSNLLQALMVAACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKVLEKQHAALIETVPFKTVAMFTLFQTAYLLLCFGLTWIPIAGVLFPLLIMLLIPVRQYFLPKFFKGAHLQELDAAAYEEAPAISFNLSFDVGFRKSDNNSQ*

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