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Report for Sequence Feature Glyma05g02140

Feature Type:gene_model
Chromosome:Gm05
Start:1562541
stop:1564269
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g02140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36330AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:15233620-15235298 FORWARD LENGTH=283 SoyBaseE_val: 7.00E-77ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_D7LIR2UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein ARALYDRAFT_482607 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=CSPLI_ARALL SoyBaseE_val: 2.00E-73ISS
UniRef100_I1JZZ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JZZ8_SOYBN SoyBaseE_val: 5.00E-144ISS

Expression Patterns of Glyma05g02140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02140
ParalogEvidenceComments
Glyma17g09780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g037100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g02140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g02140
>Glyma05g02140.2   sequence type=CDS   gene model=Glyma05g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCTGAAAAAGGGAAAGAATGATGTTTCATCAGTTAAGTTAAGTAAGCAGCAAACAACATCAACTCAGTTCGCCCAGGCCGCGCCCCCCGCGCCGGAATCCGAGCACCGGAACCCGCCGCCGGAGACCTTCATCACCCGTCCCGTGAGGCCGGATACGAGGTCTCCGGGCGTTGTTGGTCGGACGCGACCGAGGGCGGTGGCGCCGCCCAGGCCGATGGTGCCAAAAAGAGAGGTGATGGCGAAAAAGGTGGCGTTTTGTTTCCGGTTAAGCGAAGTAGTGCTGTGTCTGATTTCGTTTTCGGTTATGGCCGCGGATAAGACCCGTGGTTGGAGCGGTGATTCTTTTGACCGCTACAAGGAATACAGGTATTGTTTATCAGTGAATGTTATTGCATTTGTATACGCAGCGTTTCAAGCGGGTGATCTGGCGTATCAAGTAGTAACGGGGAGACGCATAATCAATCACCACCTGCGTTACCACTTTGATTTCTTCATGGATCAGGTTTTGGCGTATCTTTTGATATCGGCTGCATCATCTGCTGCCACAAGGGTTGATGACTGGCAATCGAATTGGGGAAAAGATGAGTTCACAGAGATGGCTAGTGCTTCAATTGCGTTGGCCTTTCTTGCTTTTGTTGCCTTTGCTATTAGCTCCTTATTCTCTGGCTACAACCTCTGCACTCTGTTCTCATAG
Predicted protein sequences of Glyma05g02140
>Glyma05g02140.2   sequence type=predicted peptide   gene model=Glyma05g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLKKGKNDVSSVKLSKQQTTSTQFAQAAPPAPESEHRNPPPETFITRPVRPDTRSPGVVGRTRPRAVAPPRPMVPKREVMAKKVAFCFRLSEVVLCLISFSVMAADKTRGWSGDSFDRYKEYRYCLSVNVIAFVYAAFQAGDLAYQVVTGRRIINHHLRYHFDFFMDQVLAYLLISAASSAATRVDDWQSNWGKDEFTEMASASIALAFLAFVAFAISSLFSGYNLCTLFS*






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