Report for Sequence Feature Glyma05g02070
Feature Type: gene_model
Chromosome: Gm05
Start: 1492929
stop: 1496387
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g02070
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G62850 AT
Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240
SoyBase E_val: 7.00E-99 ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005887 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0051119 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity
SoyBase N/A ISS
KOG1623
KOG
Multitransmembrane protein
JGI ISS
PTHR10791 Panther
STROMAL CELL PROTEIN/NODULIN MTN3-RELATED
JGI ISS
PF03083 PFAM
MtN3/saliva family
JGI ISS
UniRef100_I1MTI5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTI5_SOYBN
SoyBase E_val: 2.33E-156 ISS
UniRef100_Q70ET6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Seven-transmembrane-domain protein 1 n=1 Tax=Solanum lycopersicum RepID=Q70ET6_SOLLC
SoyBase E_val: 4.00E-102 ISS
Proteins Associated with Glyma05g02070
Locus Gene Symbol Protein Name
SWEET9 sucrose effluxer gene 9
Expression Patterns of Glyma05g02070
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g02070
Paralog Evidence Comments
Glyma17g09840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g02070 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g036500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g02070
Coding sequences of Glyma05g02070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g02070.2 sequence type=CDS gene model=Glyma05g02070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTGACACTGGAGCAATAAGAACTGTCATTGGAGTAATTGGAAATGTCATCTCCTTTTGTTTATTCATGTCTCCCGTACCTACATTTATATCAATATGGAAGTCAAAATCAGTGCAAAATTTCAAGCCAGATCCTTATATTGCAACTATACTCAATTGTGGAATGTGGTCAATCTATGGAATGCCCTTCGTAACTGAAGATAACACTCTTGTCGTCACAATAAATGGTTTTGGCTTCTTCCTTGAGATCTTCTACGCTCTCATCTTCTTTGTATATTCAACCTGGAGCAAGCGGAGGAAGATCATCCTAATCTTCCTGGGTGAACTCGTCTTCCTTGCGGTAGTGATATTTCTAATCATGACCTTTCTTCACTCTGCCAAGCAAAGAAAGGTGATTGTTGGGCCTATATGCATAGTCTTCAACATCCTTATGTACTTTGCACCCTTAACTGTCATGCGACAAGTAATTCGAACAAAGAGTGTGAAGTACATGCCTTTCTTACTTTCGTTCGCCAACTTTGCCAATGGAGTTATCTGGACGACCTATGCCTTACTTAAGTGGGATCCATTCATCGTGATTCCCAATGGCATTGGAACAGTATCCGGGTTGGTGCAGCTGATCCTCTATGCCATGTACTACAGAACAACCAAATGGGATGAAGAAATCGATTCCGTATGA
Predicted protein sequences of Glyma05g02070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g02070.2 sequence type=predicted peptide gene model=Glyma05g02070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVDTGAIRTVIGVIGNVISFCLFMSPVPTFISIWKSKSVQNFKPDPYIATILNCGMWSIYGMPFVTEDNTLVVTINGFGFFLEIFYALIFFVYSTWSKRRKIILIFLGELVFLAVVIFLIMTFLHSAKQRKVIVGPICIVFNILMYFAPLTVMRQVIRTKSVKYMPFLLSFANFANGVIWTTYALLKWDPFIVIPNGIGTVSGLVQLILYAMYYRTTKWDEEIDSV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
