Report for Sequence Feature Glyma05g01990
Feature Type: gene_model
Chromosome: Gm05
Start: 1434628
stop: 1436628
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g01990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23980 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:8484879-8485988 REVERSE LENGTH=369
SoyBase E_val: 9.00E-85 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR14155 Panther
RING FINGER PROTEIN 6/12/38
JGI ISS
PTHR14155:SF26 Panther
OS08G0445000 PROTEIN
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7JNT9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JNT9_MEDTR
SoyBase E_val: 2.00E-121 ISS
UniRef100_I1JZY4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JZY4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g01990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g01990
Paralog Evidence Comments
Glyma17g09930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g01990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g035800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g01990
Coding sequences of Glyma05g01990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g01990.2 sequence type=CDS gene model=Glyma05g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGCAGCATCAATGGAAAGTTGAAGTACTCATCATATTATCCTCAATCTCCATTCTCAGCATTCGAAGCTCCCAACGATGGTAACATTAGCAATAACAAAGAAGCAACAACGCCATCATCTCTCAGCAGAATCAGTCCACTCATTTTACTGGTCATAATAGTTCTAGCAGTTATCTTCTTCGTCTACGGACTCGTCCATTTGATTCTGTGGTTTTTCATGAAGAGGCCATTATCACCTTCATCTCTCTATAGCTACTCCAACAGGTTCCACGAAAATTCCACGCGCTCCCGTGTTCTCCAAAGGCAGCTTCAGCAACTCTTCCGCTTGCATGATTCGGGTCTCGACCAAGCCCTCATAGACGCTCTACCCGTTTTCTATTACCAAGAATTGTTGGGGTCGAAGGAACCGTTCGACTGTGCCGTGTGTTTGTGCGAGTTCTCCAAGGAAGACAAGCTGAGGTTGCTTCCTATGTGCACGCACGCCTTCCACATGAACTGTCTTGACATGTGGCTCCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCATCTCTGTCCGAGTATATGGAGAATCAGAATCAGAATCAGAATTCAATGCTTAATGTTGGAAATTCCAACTCTTTGGTTTTGCCCAGAGGTGAAGAAGAGAATAATGGGTGTTCAGATAGTCAAAGATCAGTGGGGAAAAGGGTGTTTTCTGTTAGACTTGGAAAATTTAGAAACAGTGGAGTGGAGGGTGGAGAGGTGGGAGGGGATGGTGGTTGTAGTTTGAATGAGAGGAGATGCTACTCTATGGGTTCGTATCGGTATGTGGTTCGTGATTTGAATTTGCAAGTAGTGTTATCTCATGGTGATGATGTTTTGGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACACCACATTTCATGACTCTAATGCACCTTTCCCTTGA
Predicted protein sequences of Glyma05g01990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g01990.2 sequence type=predicted peptide gene model=Glyma05g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRSINGKLKYSSYYPQSPFSAFEAPNDGNISNNKEATTPSSLSRISPLILLVIIVLAVIFFVYGLVHLILWFFMKRPLSPSSLYSYSNRFHENSTRSRVLQRQLQQLFRLHDSGLDQALIDALPVFYYQELLGSKEPFDCAVCLCEFSKEDKLRLLPMCTHAFHMNCLDMWLLSNSTCPLCRASLSEYMENQNQNQNSMLNVGNSNSLVLPRGEEENNGCSDSQRSVGKRVFSVRLGKFRNSGVEGGEVGGDGGCSLNERRCYSMGSYRYVVRDLNLQVVLSHGDDVLENGNVEGKRIGDSTKGESFSVSKIWLWSKNTTFHDSNAPFP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
