SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g01956

Feature Type:gene_model
Chromosome:Gm05
Start:1406491
stop:1407668
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g01956
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40240AT Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr5:16082325-16084466 REVERSE LENGTH=368 SoyBaseE_val: 8.00E-42ISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00892PFAM EamA-like transporter family JGI ISS
UniRef100_G7JNU3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7JNU3_MEDTR SoyBaseE_val: 3.00E-103ISS
UniRef100_G7JNU3UniRef Annotation by Michelle Graham. Best UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7JNU3_MEDTR SoyBaseE_val: 3.00E-103ISS

Expression Patterns of Glyma05g01956
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01956 not represented in the dataset
Glyma05g01956 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g01956
ParalogEvidenceComments
Glyma17g09961 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g01956 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g035500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g01956
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g01956
>Glyma05g01956.2   sequence type=transcript   gene model=Glyma05g01956   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACAGTGCTGTCCATCGCTGGAGCATTACTAGTGACCCTTTACAAAGGAAGTCCCATCATCAGCTTTCGAACTCAACCCTCGCCAACACAACCATTGCCACCTTTGTTGGCTGAAACCAGTAACTGGGTTATTGGAGGTCTCTTCTTTGCCACTGCCTCTATTTCTCTTGCAGCCTGGAATATTACACAGGCAGCAATTCTGAAAGGATATTCATCTCAGTTAACCATATTAGCCTACTATTGCCTGTTTGGAACCATCCAAAGTGCAATACTTTCTCTCATTGTAGTCAGAGATCCAAATGACTGGAAAATAAGCCCTGACATTGATCTCATCGCTGTATTCTATTCAGCTGTTGTGGGAAGTGTGGTGACATTTTCTGTAAACACTTGGTGCATTAAAAAGAAAGGACCTGTATTTGTTAGCTTGTTCAAGCCTGTGGGGATTGCCATTGCTGCCTTTTCGACTGTTGTCTTCCTTGGTGAAACACTCCATGTTGGCAGTGATAATTGCCATCGGATTTTACACAGTATTGTGGGCACAATCAAAAGGGGAAAACGCAAAAGGCTTCCAAGTTGATGGACTGTCATCCCCGTCTGCCCAAGCGAGTCCTCTACTCGAGTTCCATGAAAGCAATGTTTTAGCATAAGCATTTACCAGTGTCTAGTACTAGTAGTTCATCTTCGTCAATTTTTTCAACAAACACCGGTGTGGTGAAAGAATCATTACTTTTCAGGGGATTTTCTTTTACCAATCTATAGTTCTGTCTTGCATTGCCTGTCTGTATATATCACATTGGTGTAAGTAATGAAAACTCTTTACATTGCTCAGTTTCCTCAA
Coding sequences of Glyma05g01956
>Glyma05g01956.1   sequence type=CDS   gene model=Glyma05g01956   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACAGTGCTGTCCATCGCTGGAGCATTACTAGTGACCCTTTACAAAGGAAGTCCCATCATCAGCTTTCGAACTCAACCCTCGCCAACACAACCATTGCCACCTTTGTTGGCTGAAACCAGTAACTGGGTTATTGGAGGTCTCTTCTTTGCCACTGCCTCTATTTCTCTTGCAGCCTGGAATATTACACAGGCAGCAATTCTGAAAGGATATTCATCTCAGTTAACCATATTAGCCTACTATTGCCTGTTTGGAACCATCCAAAGTGCAATACTTTCTCTCATTGTAGTCAGAGATCCAAATGACTGGAAAATAAGCCCTGACATTGATCTCATCGCTGTATTCTATTCAGCTGTTGTGGGAAGTGTGGTGACATTTTCTGTAAACACTTGGTGCATTAAAAAGAAAGGACCTGTATTTGTTAGCTTGTTCAAGCCTGTGGGGATTGCCATTGCTGCCTTTTCGACTGTTGTCTTCCTTGGTGAAACACTCCATGTTGGCAGTGTTGTTGGTGCAGTGATAATTGCCATCGGATTTTACACAGTATTGTGGGCACAATCAAAAGGGGAAAACGCAAAAGGCTTCCAAGTTGATGGACTGTCATCCCCGTCTGCCCAAGCGAGTCCTCTACTCGAGTTCCATGAAAGCAATGTTTTAGCATAA

>Glyma05g01956.2   sequence type=CDS   gene model=Glyma05g01956   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACAGTGCTGTCCATCGCTGGAGCATTACTAGTGACCCTTTACAAAGGAAGTCCCATCATCAGCTTTCGAACTCAACCCTCGCCAACACAACCATTGCCACCTTTGTTGGCTGAAACCAGTAACTGGGTTATTGGAGGTCTCTTCTTTGCCACTGCCTCTATTTCTCTTGCAGCCTGGAATATTACACAGGCAGCAATTCTGAAAGGATATTCATCTCAGTTAACCATATTAGCCTACTATTGCCTGTTTGGAACCATCCAAAGTGCAATACTTTCTCTCATTGTAGTCAGAGATCCAAATGACTGGAAAATAAGCCCTGACATTGATCTCATCGCTGTATTCTATTCAGCTGTTGTGGGAAGTGTGGTGACATTTTCTGTAAACACTTGGTGCATTAAAAAGAAAGGACCTGTATTTGTTAGCTTGTTCAAGCCTGTGGGGATTGCCATTGCTGCCTTTTCGACTGTTGTCTTCCTTGGTGAAACACTCCATGTTGGCAGTGATAATTGCCATCGGATTTTACACAGTATTGTGGGCACAATCAAAAGGGGAAAACGCAAAAGGCTTCCAAGTTGA
Predicted protein sequences of Glyma05g01956
>Glyma05g01956.1   sequence type=predicted peptide   gene model=Glyma05g01956   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTVLSIAGALLVTLYKGSPIISFRTQPSPTQPLPPLLAETSNWVIGGLFFATASISLAAWNITQAAILKGYSSQLTILAYYCLFGTIQSAILSLIVVRDPNDWKISPDIDLIAVFYSAVVGSVVTFSVNTWCIKKKGPVFVSLFKPVGIAIAAFSTVVFLGETLHVGSVVGAVIIAIGFYTVLWAQSKGENAKGFQVDGLSSPSAQASPLLEFHESNVLA*

>Glyma05g01956.2   sequence type=predicted peptide   gene model=Glyma05g01956   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTVLSIAGALLVTLYKGSPIISFRTQPSPTQPLPPLLAETSNWVIGGLFFATASISLAAWNITQAAILKGYSSQLTILAYYCLFGTIQSAILSLIVVRDPNDWKISPDIDLIAVFYSAVVGSVVTFSVNTWCIKKKGPVFVSLFKPVGIAIAAFSTVVFLGETLHVGSDNCHRILHSIVGTIKRGKRKRLPS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo