Glyma05g01900 - SoyBase

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Report for Sequence Feature Glyma05g01900

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1361234
stop:	1368232
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g01900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62890	AT	Annotation by Michelle Graham. TAIR10: Xanthine/uracil permease family protein \| chr5:25243723-25247075 FORWARD LENGTH=532	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG1292	KOG	Xanthine/uracil transporters	JGI		ISS
PTHR11119	Panther	PURINE PERMEASE	JGI		ISS
PTHR11119:SF8	Panther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	JGI		ISS
PF00860	PFAM	Permease family	JGI		ISS
UniRef100_G7JNU5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleobase ascorbate transporter n=1 Tax=Medicago truncatula RepID=G7JNU5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JZX7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZX7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g01900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01900 not represented in the dataset	Glyma05g01900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g01900

Paralog	Evidence	Comments
Glyma17g10000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g01900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g035000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g01900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g01900

Limit To All Plant Sequences

>Glyma05g01900.2   sequence type=transcript   gene model=Glyma05g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTCTTTTTTGTTTTTAGAGTGTGTTTTGTAACTTTTGTTTCAGATTTGCGTTTTGATTCGTTGATTCCTTCATTTCCTTGCAGTTTTGTTGCTGAGTGTGTGTGAAACTGTGAAAGAGAGTTATGGCAGGAGGTGGTGGAGCTCCAGCACCTAAGATTGATGAGCCACAACCTCATCCCCCGAAGGATCAGTTACCGAATGTTTCTTACTGCATTACGAGTCCTCCTCCATGGCCTGAGGCCATACTTCTTGGTTTTCAACATTATCTTGTGATGCTCGGTACAACTGTGCTAATTCCCACTGCTCTTGTTCCCCAGATGGGAGGTGGCAATGAGGAGAAGGCAAAAGTTATCCAAACTCTACTTTTTGTAGCTGGAATTAACACATTGCTGCAAACTCTGTTTGGAACTCGATTGCCTGCAGTAATTGGAGGGTCTTATACTTACGTTGCAACAACAATCTCTATTATTCTTTCTGGTCGATTCAGTGATGAGCCAGATCCTATAGAGAAATTCAAGAGGATAATGCGGGCAACCCAAGGTGCTCTTATTGTTGCTTCAACTCTTCAAATAGTACTAGGCTTTAGTGGCCTTTGGCGAAATGTTGCAAGGTTCTTAAGTCCACTTTCAGCAGTTCCTTTGGTATCTCTTGTTGGTTTTGGGCTTTATGAGTTAGGCTTTCCTGGGGTTGCTAAATGTGTAGAGATTGGACTGCCAGAGCTTATATTACTAGTATTTATTTCACAGTTTGTACCTCATGTGCTACATGCAGGAAAACATGTCTTCGATCGGTTCGCTGTTTTATTTACAATTGCAATTGTATGGTTATATGCTTATCTGCTCACTGTTGGAGGGGCATACAACCATGCTGCACCTAAAACACAGTCAACCTGTCGCACTGATCGATCTGGTTTAATAGAATCTGCCCCATGGATACGAGTTCCTTATCCATTTCAATGGGGAGCACCTACATTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCATCCTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTTTATTGCTGTCTATCGGTATGCAAGTGCAACACCATTACCACCATCTATTCTTAGTCGCGGCATCGGTTGGCAGGGAGTTGGCATTCTGTTATCAGGATTGTTTGGAACTGGCAATGGATCCTCTGTATCTGTAGAAAATGCTGGTCTTTTGGCTTTAACTCGTGTTGGCAGTCGAAGAGTGGTGCAAATAGCGGCCGGTTTTATGATTTTCTTTTCAATTCTCGGGAAATTTGGAGCCGTTTTTGCATCCATTCCACCTCCCATTGTTGCTGCACTGTACTGCTTGTTTTTCGCTTATGTTGGAGCGGGAGGTCTAAGTTTTCTTCAATTCTGCAACCTCAACAGTTTTAGAACAATATTTGTATTAGGCTACTCCATCTTCATTGGCTTGTCTGTGTCGCAGTACTTCAATGAGTACACAGCAATTAATGGTTATGGTCCGGTTCACACCAAAGCAAGATGGTTCAATGATATAATCAATGTCCCGTTCCAATCAAAAGCCTTTGTTGCGGGTTGTGTGGCATATTTCTTGGACAACACACTACATAAGAAGGAAGCTGCTATTCGGAAAGATAGAGGAAAGCATTGGTGGGACAAGTACCGTTCCTTCAAGACTGACACAAGAAGTGAAGAGTTTTATTCACTGCCTTTCAACCTCAACAAATACTTCCCATCTGTGTAACTGTGCAGCTTAACTAATAAAAATAGGGGGTTTCATTTCATCCAAAATTGAGTCACAAGAGTCTCTGAAAGGTCGTGATTTGACTTTTTCTGATATGAGATTGGATCTTATTACAGGTTATAGTTATATGAAGTCCTCTTCTGCTATAGAATATTCTATAACATTTGTTATATTGCTTTTCTTTATGTAAATGCTGACTTGGAATTTGGAAAGTTGATTCACTGTAGTTAAGTGCCCATTTTATTTTTCATTCATTATGTTCACTTTTATTATTTTATTTCACAGGGGATTATTTTAAACTGCATTGTTTAATCGGGTTAATGATGCGAGTAA

Coding sequences of Glyma05g01900

Limit To All Plant Sequences

>Glyma05g01900.1   sequence type=CDS   gene model=Glyma05g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGGTGGTGGAGCTCCAGCACCTAAGATTGATGAGCCACAACCTCATCCCCCGAAGGATCAGTTACCGAATGTTTCTTACTGCATTACGAGTCCTCCTCCATGGCCTGAGGCCATACTTCTTGGTTTTCAACATTATCTTGTGATGCTCGGTACAACTGTGCTAATTCCCACTGCTCTTGTTCCCCAGATGGGAGGTGGCAATGAGGAGAAGGCAAAAGTTATCCAAACTCTACTTTTTGTAGCTGGAATTAACACATTGCTGCAAACTCTGTTTGGAACTCGATTGCCTGCAGTAATTGGAGGGTCTTATACTTACGTTGCAACAACAATCTCTATTATTCTTTCTGGTCGATTCAGTGATGAGCCAGATCCTATAGAGAAATTCAAGAGGATAATGCGGGCAACCCAAGGTGCTCTTATTGTTGCTTCAACTCTTCAAATAGTACTAGGCTTTAGTGGCCTTTGGCGAAATGTTGCAAGGTTCTTAAGTCCACTTTCAGCAGTTCCTTTGGTATCTCTTGTTGGTTTTGGGCTTTATGAGTTAGGCTTTCCTGGGGTTGCTAAATGTGTAGAGATTGGACTGCCAGAGCTTATATTACTAGTATTTATTTCACAGTTTGTACCTCATGTGCTACATGCAGGAAAACATGTCTTCGATCGGTTCGCTGTTTTATTTACAATTGCAATTGTATGGTTATATGCTTATCTGCTCACTGTTGGAGGGGCATACAACCATGCTGCACCTAAAACACAGTCAACCTGTCGCACTGATCGATCTGGTTTAATAGAATCTGCCCCATGGATACGAGTTCCTTATCCATTTCAATGGGGAGCACCTACATTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCATCCTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTTTATTGCTGTCTATCGGTATGCAAGTGCAACACCATTACCACCATCTATTCTTAGTCGCGGCATCGGTTGGCAGGGAGTTGGCATTCTGTTATCAGGATTGTTTGGAACTGGCAATGGATCCTCTGTATCTGTAGAAAATGCTGGTCTTTTGGCTTTAACTCGTGTTGGCAGTCGAAGAGTGGTGCAAATAGCGGCCGGTTTTATGATTTTCTTTTCAATTCTCGGGAAATTTGGAGCCGTTTTTGCATCCATTCCACCTCCCATTGTTGCTGCACTGTACTGCTTGTTTTTCGCTTATGTTGGAGCGGGAGGTCTAAGTTTTCTTCAATTCTGCAACCTCAACAGTTTTAGAACAATATTTGTATTAGGCTACTCCATCTTCATTGGCTTGTCTGTGTCGCAGTACTTCAATGAGTACACAGCAATTAATGGTTATGGTCCGGTTCACACCAAAGCAAGATGGTTCAATGATATAATCAATGTCCCGTTCCAATCAAAAGCCTTTGTTGCGGGTTGTGTGGCATATTTCTTGGACAACACACTACATAAGAAGGAAGCTGCTATTCGGAAAGATAGAGGAAAGCATTGGTGGGACAAGTACCGTTCCTTCAAGACTGACACAAGAAGTGAAGAGTTTTATTCACTGCCTTTCAACCTCAACAAATACTTCCCATCTGTGTAA

>Glyma05g01900.2   sequence type=CDS   gene model=Glyma05g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGGTGGTGGAGCTCCAGCACCTAAGATTGATGAGCCACAACCTCATCCCCCGAAGGATCAGTTACCGAATGTTTCTTACTGCATTACGAGTCCTCCTCCATGGCCTGAGGCCATACTTCTTGGTTTTCAACATTATCTTGTGATGCTCGGTACAACTGTGCTAATTCCCACTGCTCTTGTTCCCCAGATGGGAGGTGGCAATGAGGAGAAGGCAAAAGTTATCCAAACTCTACTTTTTGTAGCTGGAATTAACACATTGCTGCAAACTCTGTTTGGAACTCGATTGCCTGCAGTAATTGGAGGGTCTTATACTTACGTTGCAACAACAATCTCTATTATTCTTTCTGGTCGATTCAGTGATGAGCCAGATCCTATAGAGAAATTCAAGAGGATAATGCGGGCAACCCAAGGTGCTCTTATTGTTGCTTCAACTCTTCAAATAGTACTAGGCTTTAGTGGCCTTTGGCGAAATGTTGCAAGGTTCTTAAGTCCACTTTCAGCAGTTCCTTTGGTATCTCTTGTTGGTTTTGGGCTTTATGAGTTAGGCTTTCCTGGGGTTGCTAAATGTGTAGAGATTGGACTGCCAGAGCTTATATTACTAGTATTTATTTCACAGTTTGTACCTCATGTGCTACATGCAGGAAAACATGTCTTCGATCGGTTCGCTGTTTTATTTACAATTGCAATTGTATGGTTATATGCTTATCTGCTCACTGTTGGAGGGGCATACAACCATGCTGCACCTAAAACACAGTCAACCTGTCGCACTGATCGATCTGGTTTAATAGAATCTGCCCCATGGATACGAGTTCCTTATCCATTTCAATGGGGAGCACCTACATTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCATCCTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTTTATTGCTGTCTATCGGTATGCAAGTGCAACACCATTACCACCATCTATTCTTAGTCGCGGCATCGGTTGGCAGGGAGTTGGCATTCTGTTATCAGGATTGTTTGGAACTGGCAATGGATCCTCTGTATCTGTAGAAAATGCTGGTCTTTTGGCTTTAACTCGTGTTGGCAGTCGAAGAGTGGTGCAAATAGCGGCCGGTTTTATGATTTTCTTTTCAATTCTCGGGAAATTTGGAGCCGTTTTTGCATCCATTCCACCTCCCATTGTTGCTGCACTGTACTGCTTGTTTTTCGCTTATGTTGGAGCGGGAGGTCTAAGTTTTCTTCAATTCTGCAACCTCAACAGTTTTAGAACAATATTTGTATTAGGCTACTCCATCTTCATTGGCTTGTCTGTGTCGCAGTACTTCAATGAGTACACAGCAATTAATGGTTATGGTCCGGTTCACACCAAAGCAAGATGGTTCAATGATATAATCAATGTCCCGTTCCAATCAAAAGCCTTTGTTGCGGGTTGTGTGGCATATTTCTTGGACAACACACTACATAAGAAGGAAGCTGCTATTCGGAAAGATAGAGGAAAGCATTGGTGGGACAAGTACCGTTCCTTCAAGACTGACACAAGAAGTGAAGAGTTTTATTCACTGCCTTTCAACCTCAACAAATACTTCCCATCTGTGTAA

Predicted protein sequences of Glyma05g01900

Limit To All Plant Sequences

>Glyma05g01900.1   sequence type=predicted peptide   gene model=Glyma05g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGGGAPAPKIDEPQPHPPKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTALVPQMGGGNEEKAKVIQTLLFVAGINTLLQTLFGTRLPAVIGGSYTYVATTISIILSGRFSDEPDPIEKFKRIMRATQGALIVASTLQIVLGFSGLWRNVARFLSPLSAVPLVSLVGFGLYELGFPGVAKCVEIGLPELILLVFISQFVPHVLHAGKHVFDRFAVLFTIAIVWLYAYLLTVGGAYNHAAPKTQSTCRTDRSGLIESAPWIRVPYPFQWGAPTFDAGEAFAMMMASFVALVESSGAFIAVYRYASATPLPPSILSRGIGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQIAAGFMIFFSILGKFGAVFASIPPPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRTIFVLGYSIFIGLSVSQYFNEYTAINGYGPVHTKARWFNDIINVPFQSKAFVAGCVAYFLDNTLHKKEAAIRKDRGKHWWDKYRSFKTDTRSEEFYSLPFNLNKYFPSV*

>Glyma05g01900.2   sequence type=predicted peptide   gene model=Glyma05g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGGGAPAPKIDEPQPHPPKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTALVPQMGGGNEEKAKVIQTLLFVAGINTLLQTLFGTRLPAVIGGSYTYVATTISIILSGRFSDEPDPIEKFKRIMRATQGALIVASTLQIVLGFSGLWRNVARFLSPLSAVPLVSLVGFGLYELGFPGVAKCVEIGLPELILLVFISQFVPHVLHAGKHVFDRFAVLFTIAIVWLYAYLLTVGGAYNHAAPKTQSTCRTDRSGLIESAPWIRVPYPFQWGAPTFDAGEAFAMMMASFVALVESSGAFIAVYRYASATPLPPSILSRGIGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQIAAGFMIFFSILGKFGAVFASIPPPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRTIFVLGYSIFIGLSVSQYFNEYTAINGYGPVHTKARWFNDIINVPFQSKAFVAGCVAYFLDNTLHKKEAAIRKDRGKHWWDKYRSFKTDTRSEEFYSLPFNLNKYFPSV*

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