Glyma05g01890 - SoyBase

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Report for Sequence Feature Glyma05g01890

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1357079
stop:	1360058
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g01890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23820	AT	Annotation by Michelle Graham. TAIR10: spermidine synthase 1 \| chr1:8420278-8422724 FORWARD LENGTH=378	SoyBase	E_val: 1.00E-109	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004766	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1562	KOG	Spermidine synthase	JGI		ISS
PTHR11558	Panther	SPERMIDINE SYNTHASE	JGI		ISS
PTHR11558:SF11	Panther	PUTRESCINE N-METHYLTRANSFERASE	JGI		ISS
PF01564	PFAM	Spermine/spermidine synthase	JGI		ISS
UniRef100_B9RB51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spermidine synthase 1, putative n=1 Tax=Ricinus communis RepID=B9RB51_RICCO	SoyBase	E_val: 7.00E-123	ISS
UniRef100_I1JZX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g01890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01890 not represented in the dataset	Glyma05g01890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g01890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g034900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g01890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g01890

Limit To All Plant Sequences

>Glyma05g01890.2   sequence type=transcript   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCATTTACGTTCTTAGTTCTCCACGCCAAATATAGCATAAGTGCTGATTGGCCATATAGCTATTGGCATATTCAATTACCTTTTTAAAAGCAAAGTCCAATGGCCAAATAGACTAGTGTTGTTTATCAATATACCAGCAAATCACAAGTTTGGGGTGAGAATTTTGATCATAAGAACCTTGTAATAACAACAGCAGCTGATAATGGAAAGAAGGAGAGTAATGGAGCACCTAAAGACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACATATATAAAATGGAAAAGATCCTATTCCACGGGAAATCAGAATTCCAAGAGCTTCTTGTATTCGAGACATCTAGACATGGCAAGATTGCAATTCCGGATGGGTATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCATTCACCTTGCACTCTGTTCCATTCCAAATCCAAAGAAGGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATGTAAGTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACTCAGAGATCCATGCTACTGCCTTCTTTTGTGGACAAGGTTGGTTGATCCAACAAGATATTCATAAATAATTCGGTAGTATTAAGGAATTGTTGTTAGTTACCCTTTGTACTGTGTCGTTCTGCCTATTTATGGGTAATATGTTGCACGTGCGAAACTATCTCAATTTTATTTGTATTGGAGTATTGTAAGAGCTGCAATTATTCAACTGCAGTAGTCTCGGGTAGCTAGCTTTACTCTAGTTAGTCATTAGAGAGTTAGTTTCTGAGTTAGTTAGTTAGTTAGTGACAGTTGTTGTAACCAACAGAATAGTCTATAAATACTAAACTGTACTCAGAGTTTGGTGGTTAATGAAACTGAGTTGCTTTCCCTTTCATTTCTCTGTTATCAAATTCTATGATAGTATCAGAGCTAGTTCGATCAAGCGACCAACAATGGCA

>Glyma05g01890.3   sequence type=transcript   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCATTTACGTTCTTAGTTCTCCACGCCAAATATAGCATAAGTGCTGATTGGCCATATAGCTATTGGCATATTCAATTACCTTTTTAAAAGCAAAGTCCAATGGCCAAATAGACTAGTGTTGTTTATCAATATACCAGCAAATCACAAGTTTGGGGTGAGAATTTTGATCATAAGAACCTTGTAATAACAACAGCAGCTGATAATGGAAAGAAGGAGAGTAATGGAGCACCTAAAGACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACATATATAAAATGGAAAAGATCCTATTCCACGGGAAATCAGAATTCCAAGAGCTTCTTGTATTCGAGACATCTAGACATGGCAAGATTGCAATTCCGGATGGGTATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCATTCACCTTGCACTCTGTTCCATTCCAAATCCAAAGAAGGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACTCAGAGATCCATGCTACTGCCTTCTTTTGTGGACAAGGTTGGTTGATCCAACAAGATATTCATAAATAATTCGGTAGTATTAAGGAATTGTTGTTAGTTACCCTTTGTACTGTGTCGTTCTGCCTATTTATGGGTAATATGTTGCACGTGCGAAACTATCTCAATTTTATTTGTATTGGAGTATTGTAAGAGCTGCAATTATTCAACTGCAGTAGTCTCGGGTAGCTAGCTTTACTCTAGTTAGTCATTAGAGAGTTAGTTTCTGAGTTAGTTAGTTAGTTAGTGACAGTTGTTGTAACCAACAGAATAGTCTATAAATACTAAACTGTACTCAGAGTTTGGTGGTTAATGAAACTGAGTTGCTTTCCCTTTCATTTCTCTGTTATCAAATTCTATGATAGTATCAGAGCTAGTTCGATCAAGCGACCAACAATGGCA

>Glyma05g01890.4   sequence type=transcript   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCATTTACGTTCTTAGTTCTCCACGCCAAATATAGCATAAGTGCTGATTGGCCATATAGCTATTGGCATATTCAATTACCTTTTTAAAAGCAAAGTCCAATGGCCAAATAGACTAGTGTTGTTTATCAATATACCAGCAAATCACAAGTTTGGGGTGAGAATTTTGATCATAAGAACCTTGTAATAACAACAGCAGCTGATAATGGAAAGAAGGAGAGTAATGGAGCACCTAAAGACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGACATCTAGACATGGCAAGATTGCAATTCCGGATGGGTATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCATTCACCTTGCACTCTGTTCCATTCCAAATCCAAAGAAGGGTTTTTGTTCATTCTTTCTATTCCTCACTTGCACATGAACTATCCTATCTAATGAAAAAAGAAACTTTTGTTTAAACATTACAGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATGTAAGTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACTCAGAGATCCATGCTACTGCCTTCTTTTGTGGACAAGGTTGGTTGATCCAACAAGATATTCATAAATAATTCGGTAGTATTAAGGAATTGTTGTTAGTTACCCTTTGTACTGTGTCGTTCTGCCTATTTATGGGTAATATGTTGCACGTGCGAAACTATCTCAATTTTATTTGTATTGGAGTATTGTAAGAGCTGCAATTATTCAACTGCAGTAGTCTCGGGTAGCTAGCTTTACTCTAGTTAGTCATTAGAGAGTTAGTTTCTGAGTTAGTTAGTTAGTTAGTGACAGTTGTTGTAACCAACAGAATAGTCTATAAATACTAAACTGTACTCAGAGTTTGGTGGTTAATGAAACTGAGTTGCTTTCCCTTTCATTTCTCTGTTATCAAATTCTATGATAGTATCAGAGCTAGTTCGATCAAGCGACCAACAATGGCA

Coding sequences of Glyma05g01890

Limit To All Plant Sequences

>Glyma05g01890.1   sequence type=CDS   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACCTAAAGACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACATATATAAAATGGAAAAGATCCTATTCCACGGGAAATCAGAATTCCAAGAGCTTCTTGTATTCGAGACATCTAGACATGGCAAGATTGCAATTCCGGATGGGTATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCATTCACCTTGCACTCTGTTCCATTCCAAATCCAAAGAAGGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATGTAAGTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACTCAGAGATCCATGCTACTGCCTTCTTTTGTGGACAAGGTTGGTTGATCCAACAAGATATTCATAAATAA

>Glyma05g01890.2   sequence type=CDS   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGCTTACCAAGAGATGCTCATTCACCTTGCACTCTGTTCCATTCCAAATCCAAAGAAGGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATGTAAGTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACTCAGAGATCCATGCTACTGCCTTCTTTTGTGGACAAGGTTGGTTGATCCAACAAGATATTCATAAATAA

>Glyma05g01890.3   sequence type=CDS   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGCTTACCAAGAGATGCTCATTCACCTTGCACTCTGTTCCATTCCAAATCCAAAGAAGGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAA

>Glyma05g01890.4   sequence type=CDS   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAATGCATGTTCATATCAGAGATGGAGTTGCGTTCATCAATTCTGTTCCTGAGGGCGCTTACGATGTCATTATACTGGATGCTTTTCCAGCAATGGGACATAGTGCAGATGTTCTTGCTGATAAATGCTTCTTAGAATCAATAGCAAAGGCTCTTCGACCCCGTGGAGTGCTGTTGTGGCATACGAACTCTGAGGTTGCAGATACCATAGCTAATTGCAAGATATTCAAAGGCTCCGTTAATTATGCCTGGGCAACAGTTCCTGCATATGTAAGTGGGGCGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACTCAGAGATCCATGCTACTGCCTTCTTTTGTGGACAAGGTTGGTTGATCCAACAAGATATTCATAAATAA

Predicted protein sequences of Glyma05g01890

Limit To All Plant Sequences

>Glyma05g01890.1   sequence type=predicted peptide   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHLKTYPAFPGWYADVSWPGEAHIYKMEKILFHGKSEFQELLVFETSRHGKIAIPDGYIQLTENDEFAYQEMLIHLALCSIPNPKKGGDGGILREISRHSSVEHIDICEIDKMVIHVYKKFFPDIAVGYEDPRMHVHIRDGVAFINSVPEGAYDVIILDAFPAMGHSADVLADKCFLESIAKALRPRGVLLWHTNSEVADTIANCKIFKGSVNYAWATVPAYVSGAIGFMLCSTEGPPVNFKHPINKLNPEKNGVAKGPPKFYNSEIHATAFFCGQGWLIQQDIHK*

>Glyma05g01890.2   sequence type=predicted peptide   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLTKRCSFTLHSVPFQIQRRVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIHVYKKFFPDIAVGYEDPRMHVHIRDGVAFINSVPEGAYDVIILDAFPAMGHSADVLADKCFLESIAKALRPRGVLLWHTNSEVADTIANCKIFKGSVNYAWATVPAYVSGAIGFMLCSTEGPPVNFKHPINKLNPEKNGVAKGPPKFYNSEIHATAFFCGQGWLIQQDIHK*

>Glyma05g01890.3   sequence type=predicted peptide   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLTKRCSFTLHSVPFQIQRRVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIHVYKKFFPDIAVGYEDPRMHVHIRDGVAFINSVPEGAYDVIILDAFPAMGHSADVLADKCFLESIAKALRPRGVLLWHTNSEVADTIANCKIFKGSVNYAWATVPAYWGDWIHALLHGGSPSELQTSNK*

>Glyma05g01890.4   sequence type=predicted peptide   gene model=Glyma05g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIHVYKKFFPDIAVGYEDPRMHVHIRDGVAFINSVPEGAYDVIILDAFPAMGHSADVLADKCFLESIAKALRPRGVLLWHTNSEVADTIANCKIFKGSVNYAWATVPAYVSGAIGFMLCSTEGPPVNFKHPINKLNPEKNGVAKGPPKFYNSEIHATAFFCGQGWLIQQDIHK*

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