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Report for Sequence Feature Glyma05g01870

Feature Type:gene_model
Chromosome:Gm05
Start:1329588
stop:1333506
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10200AT Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190 SoyBaseE_val: 5.00E-90ISS
GO:0051017GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
KOG1700 KOG Regulatory protein MLP and related LIM proteins JGI ISS
PTHR24206Panther FAMILY NOT NAMED JGI ISS
PTHR24206:SF66Panther JGI ISS
PF00412PFAM LIM domain JGI ISS
UniRef100_B9RB75UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein SF3, putative n=1 Tax=Ricinus communis RepID=B9RB75_RICCO SoyBaseE_val: 3.00E-113ISS
UniRef100_I1JZX3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZX3_SOYBN SoyBaseE_val: 7.00E-159ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01870 not represented in the dataset

Glyma05g01870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g10030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g034700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g01870.1   sequence type=CDS   gene model=Glyma05g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATTTGCAGGCACTACCCAGAAGTGCACAGCATGTGAAAAGAAAGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCTCATTTCCATCAACTGTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGTGTTCCAAGAAGTGTTAGAGTGGAAAGATCTGCTGATCAGGTCCAAACCAACAAGGTTTCAAGATTATTCTCTGGAACACAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGTAAATCTTACCACAAGTCTTGTTTTAGGTGCACCCATGGAGGTTGTGTAATAAGCCCATCAAATTATATTGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGAAAATGTCCAAGTCATCACTGAGATCACAATAACACAACACACTGAGAACACAACACAACATCCGGATCCGAGTAATGGCAATACTGATACAACTCCAGCTGAGGAATCTAGTTAG

>Glyma05g01870.1   sequence type=predicted peptide   gene model=Glyma05g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFHQLFKMTGSLDKSFEGVPRSVRVERSADQVQTNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYIAHEHRLYCRHHHTQLFKQKGNFSQLDKHENVQVITEITITQHTENTTQHPDPSNGNTDTTPAEESS*







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