Glyma05g01770 - SoyBase

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Report for Sequence Feature Glyma05g01770

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1233067
stop:	1237025
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g01770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74920	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 10A8 \| chr1:28139175-28142573 REVERSE LENGTH=501	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009516	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: leucoplast	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2450	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF45	Panther	gb def: succinic-semialdehyde dehydrogenase, putative [deinococcus radiodurans]	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_B0M1A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Betaine aldehyde dehydrogenase n=1 Tax=Glycine max RepID=B0M1A5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JZW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g01770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g01770

Paralog	Evidence	Comments
Glyma17g10120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g01770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g033500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g01770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g01770

Limit To All Plant Sequences

>Glyma05g01770.1   sequence type=CDS   gene model=Glyma05g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATCCCAATTCCCCATCGGCAGTTATTCATAGACGGAGACTGGAAAGTCCCCGTCCTCAAGAATCGGATTCCCATCATCAACCCTTCCACCCAACACATCATCGGGGATATCCCAGCAGCTACTAAGGAAGACGTTGATCTCGCTGTCGCTGCCGCCAAAGCTGCCCTCTCCCGCAACAAGGGCGCCGATTGGGCCTCCGCTTCCGGCTCCGTTCGGGCTCGCTACCTCCGCGCCATCGCTGCCAAGATCACCGAGAAAAAGCCTGAACTAGCAAAACTCGAAGCTATTGACTGTGGAAAACCGCTCGATGAAGCCGCCTGGGACATCGACGATGTTGCTGGTTGCTTTGAGTTCTATGCTGACCTTGCTGAAAAATTGGACGCACAGCAAAAGGCTCATGTGTCTCTTCCCATGGACACATTCAAGAGTTATGTTCTTAAGGAGCCGATTGGAGTCGTTGCTTTAATAACTCCTTGGAATTATCCTCTGTTGATGGCTACGTGGAAGGTTGCTCCTGCTCTGGCGGCCGGCTGTGCTGCAATATTGAAGCCCTCTGAGTTGGCATCTGTGACATGTTTGGAGCTCGCTGAAATTTGCAAAGAAGTCGGGCTTCCTCCTGGCGTGTTGAACATTCTCACTGGATTAGGACCTGAAGCGGGTGCTCCTTTAGCAGCTCATCCCGATGTAGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAAATTATGACAGCTGCAGCTCAGCTGATCAAGCCTGTTTCACTAGAGCTTGGTGGGAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACCATATTTGGTTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGAAAGTATAGCAACAGAATTTTTGAATAGGATTGTGAAATGGGTCAAAAACATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGACTAGGCCCTATTGTTAGTGAAGGACAGTATGAAAAGATATTGAAGTTTATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGGTCTCGCCCAGAGCATCTAAAGAAGGGATTCTTTGTTGACCAACTAGAAGAAGTATTTGGACCAGTTCTCTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCAAATGACACTGTATATGGCTTGGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATTAAACGCAGTGGTTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTGAGTGTGAAGCAAGTGACCCAATATATCTCTGATGAACCGTGGGGCTGGTACCAGTCTCCTTCAAGGCTGTGA

Predicted protein sequences of Glyma05g01770

Limit To All Plant Sequences

>Glyma05g01770.1   sequence type=predicted peptide   gene model=Glyma05g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIPIPHRQLFIDGDWKVPVLKNRIPIINPSTQHIIGDIPAATKEDVDLAVAAAKAALSRNKGADWASASGSVRARYLRAIAAKITEKKPELAKLEAIDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDAQQKAHVSLPMDTFKSYVLKEPIGVVALITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEICKEVGLPPGVLNILTGLGPEAGAPLAAHPDVDKIAFTGSSATGSKIMTAAAQLIKPVSLELGGKSPIIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIESIATEFLNRIVKWVKNIKISDPLEEGCRLGPIVSEGQYEKILKFISNAKSEGATILTGGSRPEHLKKGFFVDQLEEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQSPSRL*

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