SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74850 | AT | Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 2 | chr1:28119237-28122314 REVERSE LENGTH=862 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009508 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_B9R902 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R902_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339E20 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339E20 related cluster n=1 Tax=unknown RepID=UPI0002339E20 | SoyBase | E_val: 0 | ISS |
|
Glyma05g01650 not represented in the dataset |
Glyma05g01650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g10240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g032300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01650.2 sequence type=CDS gene model=Glyma05g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAAAGGAGTTAAATTTCCACATGAATATGAAATATTAGCTAGATCTTTATCCAGAAAGAACAGCACGTGGCCTTTCCTCAATTACCAATTACGAACCTCAGTCTCCAGAGTCCATTTTCCATTCAAGAAGAACATGCCGCTTAAAATGACACTTACGCTTTCACCTTTCTCCCCCACGCTCCTCACTCCGGCCACCACCCTCCGCCAACTCCTCTTCACTAACTTCACACCGTCTCCGAAACGCAGGCTCCTACTCCAAGCACGTGCGGCGAAGCCCAATGTCCTCATCCCCATAAACCCCTCGGTGACGGTGGAGAAAGGAAAGTACAGCTACGACGTGGAAACCCTAATCAACCGCCTCACCGCGCTTCCGCCACGTGGCAGCATCGCGCGCTGCCTTGACCCCTTCAAGAACAAGCTCTCCCTCAACGACTTCGCCCTCGTCTTCAAGGAGTTCGCGCAGCGTGGCGACTGGCAGCGCTCCCTGCGCCTCTTCAAGTACATGCAGCGCCAGATATGGTGCAAGCCCAACGAGCACATACACACCATCATGATCACGCTATTGGGCAGAGAGGGTCTTCTCGACAAGTGCCGCGAGGTGTTCGACGAAATGCCCTCCAACGGCGTCGTCCGCACCGTCTACTCCTACACCGCCATCATCAACGCCTACGGCCGCAACGGCCAGTTCCACGCCTCGCTCGAACTCCTCAACGGAATGAAGCAGGAGAGGGTTTCGCCGAGTATTTTGACTTACAACACTGTGATTAATGCTTGTGCTAGGGGTGGGTTGGATTGGGAAGGGTTGCTAGGGTTGTTTGCTGAAATGAGGCATGAAGGGATTCAGCCTGATGTTATTACTTACAATACTTTGCTTGGTGCTTGTGCTCATAGGGGGTTAGGTGATGAGGCTGAAATGGTGTTTAGGACCATGAATGAAAGTGGGATTGTTCCTGATATTAATACTTATAGTTATCTTGTTCAGACGTTTGGGAAGTTGAATAGGCTTGAGAAGGTTTCGGAGCTTCTTAGGGAGATGGAGTGCGGGGGTAATTTGCCGGATATTACTTCTTATAATGTGTTGTTAGAGGCTTATGCTGAGTTGGGGTCTATCAAAGAGGCGATGGGTGTGTTTAGGCAGATGCAGGCTGCGGGGTGTGTGGCGAACGCGGCCACTTATAGTGTTTTGTTGAATTTATATGGGAAGCATGGGAGGTATGATGATGTTCGCGATCTTTTTCTTGAGATGAAAGTGAGCAACACGGATCCTGATGCGGGGACTTACAACATTCTCATACAGGTCTTTGGGGAGGGTGGGTACTTTAAGGAGGTGGTCACTTTGTTTCATGACATGGCGGAGGAGAATGTTGAGCCGAACATGCAGACTTATGAGGGCTTGATATTTGCCTGTGGGAAGGGAGGGCTCTATGAAGATGCCAAGAAAATTTTACTGCATATGAATGAGAAAGGAGTAGTGCCGAGTTCCAAGGCTTATACTGGGGTGATTGAAGCGTTTGGGCAGGCTGCTTTGTATGAAGAGGCTCTTGTCATGTTTAACACTATGAATGAAGTTGGAAGCAACCCAACTGTTGAGACCTACAATTCGTTAATTCATGCATTTGCAAGGGGGGGACTGTACAAAGAAGCAGAAGCAATTTTATCCAGGATGAATGAGTCTGGTTTAAAACGGGATGTACATTCGTTCAATGGTGTGATTGAAGCTTTTAGGCAAGGAGGTCAGTATGAAGAGGCTGTAAAATCTTATGTTGAAATGGAAAAAGCAAATTGTGAACCTAATGAGCTGACACTTGAAGCGGTGTTAAGCATATACTGCTCCGCTGGTCTTGTTGATGAGGGCGAGGAGCAGTTCCAAGAAATTAAAGCTTCAGGAATACTGCCCAGTGTCATGTGCTACTGCATGATGCTAGCTCTTTACGCAAAGAATGACAGGTTAAATGATGCCTATAATTTGATTGATGCGATGATCACGATGAGGGTGTCAGATATTCATCAAGTAATTGGACAAATGATCAAGGGAGATTTTGATGATGAGTCTAATTGGCAGATTGTGGAGTATGTCTTTGACAAACTCAATTCTGAAGGGTGTGGATTGGGAATGAGGTTCTACAATGCACTGTTAGAAGCTCTTTGGTGCATGTTCCAGAGAGAAAGGGCTGCTAGAGTGCTCAACGAAGCATCAAAGCGAGGGCTGTTCCCTGAACTTTTTCGTAAAAGTAAACTTGTGTGGTCTGTGGATGTACACAGGATGTCGGAAGGTGGTGCATTAACAGCACTGTCAGTTTGGCTGAACAATGTGCATGAAATGTCCATGACCGGCGATGATCTTCCCGAGGTTGCAACAGTTGTTGTGGTCAGCCGGGGTCACATGGAGAAAACCACAGATGCCCAAGATTTCCCTATCGCAAAGGCTGCCATTTCATTCTTGCAGGATAATGTACCATCGTCCTTTGCTTTCCCTGGATGGAACAAAGGTCGCATTGTTTGTCAGCAGTCACAACTGAGACGAATTCTGTCGGGCACTGAATCATCATCTAGTAGAAAAAAAATGGATAAATTAATATCTTTAAGTAATACCCCATTGACTACTGCAGGAGCCATAACATCCAAATCTGATGCGCAAAGTGGTAAAGCTAATGGTGTTGATTCTAGAACCGATAGTACAAGAACAGAGCTTCTAACGAGTGCAATTTAG
>Glyma05g01650.2 sequence type=predicted peptide gene model=Glyma05g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKGVKFPHEYEILARSLSRKNSTWPFLNYQLRTSVSRVHFPFKKNMPLKMTLTLSPFSPTLLTPATTLRQLLFTNFTPSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNVHEMSMTGDDLPEVATVVVVSRGHMEKTTDAQDFPIAKAAISFLQDNVPSSFAFPGWNKGRIVCQQSQLRRILSGTESSSSRKKMDKLISLSNTPLTTAGAITSKSDAQSGKANGVDSRTDSTRTELLTSAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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