Report for Sequence Feature Glyma05g01570
Feature Type: gene_model
Chromosome: Gm05
Start: 1069981
stop: 1074057
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g01570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G62620 AT
Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681
SoyBase E_val: 0 ISS
GO:0006486 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein glycosylation
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0008378 GO-mf
Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity
SoyBase N/A ISS
GO:0016758 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups
SoyBase N/A ISS
GO:0030246 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding
SoyBase N/A ISS
KOG2287
KOG
Galactosyltransferases
JGI ISS
PTHR11214 Panther
BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
JGI ISS
PTHR11214:SF11 Panther
BETA 1,3-GALACTOSYLTRANSFERASE-RELATED
JGI ISS
PF00337 PFAM
Galactoside-binding lectin
JGI ISS
PF01762 PFAM
Galactosyltransferase
JGI ISS
UniRef100_B9R916 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Galactosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9R916_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002339CC7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339CC7 related cluster n=1 Tax=unknown RepID=UPI0002339CC7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g01570
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g01570
Paralog Evidence Comments
Glyma17g10330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g01570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g031600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g01570
Coding sequences of Glyma05g01570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g01570.2 sequence type=CDS gene model=Glyma05g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCATCAACCCCAACACAATGCCAACAACAAGAACAAAAACGACGTCGTCAGGGTCACCACCAACCTGAAACGAATTCTGAAGCCCAAAGCAGAGATGAAAAGAGGGAGAACAGGCAAGTTCGACAATTTGGTCGCACTGAGCAGACAACGATCCATTCAGATTCTCATCGCCATTGCGCTCTTGTACGTCCTCTTCCTCACCCTCGAAATCCCCTTCGTCTTCAGAACCGCCCAACAACCCACTCACACCCGCCGTCAACTCGTTCGCCGCCAAAACGGCGTCGTCTCCGCCTTGGTCCTAAACGACGCCGCGTTCGATTCGGAGCTCTACCAATCCGCCTGCCGCGCGGGAAAGACCGTCTGGGAGGAACTAAGATCAGGAAGCCCGCCGGGCCCCATTCCGAGTCCTGAGAATCGATCCGGGCCGTGTCCGGAATCCGTTTCGGTGTCCGGGCCCGAGTTTCTGGGCCGCGGAAGTGTGATGGTGATTCCGTGTGGGCTCACGTTGGGGTCCCACGTAACGGTGGTTGGGAAGCCGTTAAGGGCGCAACGGAAGACGTGTCAGTTCGTGATGGAGTTGCAGGGGCTGAAAACGGTGGAGGGTGAGGAACCGCCTAGGGTGATGCATTTCAACCCTAGGTTGAAAGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCATTGCGCTGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGGTGAAGTGTGAGAAGTGGATTAGGGGTGATGATGATGATAGGGATGCAGTGGAGACCAAGGCAGCGTGGTGGTTGAAGAGATTGATAGGGCGGCCAAAACGAGTAACAGTTGACTGGCCATTTCCATTTTCTGAGAACAAGCTATTTATTCTTACTCTTAGTGCTGGATTGGGGGGTTACCATATTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCACACTGGATTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCCTCTTTGCCTTCGGTGCATCCCAATGTTTCTTCGCAGCAACATCTTGAATTTTCAACCAGATGGCGTGCCCCGAATCTTCCTCGCTATGGTGTGGAATTGTTTGTAGGGATCCTTTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAGTCTTCTAAAGTGGTCGCTCGTTTCTTTGTAGCACTGCACCCGAGGAAGGAAATTAATGTGGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATTGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAAAGTTGATGCTGTTATGAATCAAGCAAGGAATGTTCCACGTTCTATGAGCTTTTATATTGGGAACATTAATTACCGTCACAAACCCTTGCGCCGTGGTAAATGGGCTGTGACATATAAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCTAATGGACCGGGTTATGTTTTGTCTTCTGATATTGCACACTACATTGTATCTGAATTTGAGATGAATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAGTTTAACCGGACGAAACCGGTAAACTATTTGCATAGCTTCAAGTTCTGCCAATACGGTTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATGTGCCTGTGGGACAAATTGCAGATGCAGACAACGCCTGAGTGCTGCAACATGAGATAA
Predicted protein sequences of Glyma05g01570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g01570.2 sequence type=predicted peptide gene model=Glyma05g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MHQPQHNANNKNKNDVVRVTTNLKRILKPKAEMKRGRTGKFDNLVALSRQRSIQILIAIALLYVLFLTLEIPFVFRTAQQPTHTRRQLVRRQNGVVSALVLNDAAFDSELYQSACRAGKTVWEELRSGSPPGPIPSPENRSGPCPESVSVSGPEFLGRGSVMVIPCGLTLGSHVTVVGKPLRAQRKTCQFVMELQGLKTVEGEEPPRVMHFNPRLKGDWSGKPVIELNTCYRMHWGTALRCDGWKSRAGEDTVDGLVKCEKWIRGDDDDRDAVETKAAWWLKRLIGRPKRVTVDWPFPFSENKLFILTLSAGLGGYHINVDGRHVTSFPYHTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSSQQHLEFSTRWRAPNLPRYGVELFVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVARFFVALHPRKEINVELKKEAEYFGDIVIVPYIDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFVKVDAVMNQARNVPRSMSFYIGNINYRHKPLRRGKWAVTYKEWPEEEYPPYANGPGYVLSSDIAHYIVSEFEMNKLRLFKMEDVSMGMWVEQFNRTKPVNYLHSFKFCQYGCVEGYYTAHYQSPRQMMCLWDKLQMQTTPECCNMR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
