Glyma05g01510 - SoyBase

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Report for Sequence Feature Glyma05g01510

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1030173
stop:	1036509
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g01510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62640	AT	Annotation by Michelle Graham. TAIR10: proline-rich family protein \| chr5:25149584-25152351 REVERSE LENGTH=520	SoyBase	E_val: 2.00E-73	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4672	KOG	Uncharacterized conserved low complexity protein	JGI		ISS
PTHR13361	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13361:SF1	Panther	gb def: similar to ww domain binding protein 11, sh3 domain-binding protein snp70, npw38	JGI		ISS
PF09429	PFAM	WW domain binding protein 11	JGI		ISS
UniRef100_B9R923	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Epstein-Barr nuclear antigen, putative n=1 Tax=Ricinus communis RepID=B9R923_RICCO	SoyBase	E_val: 2.00E-155	ISS
UniRef100_I1JZT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZT9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g01510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g01510

Paralog	Evidence	Comments
Glyma17g10370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g01510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g031100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g01510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g01510

Limit To All Plant Sequences

>Glyma05g01510.1   sequence type=CDS   gene model=Glyma05g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACGACGAAGGGCGGCAAGGTCATGAACCCTACCGATGCTTACCGAAAGGAGATTCGGAAGAAAGAATTGAAAAGGAATAAGAAAGAAAGAAAGAAGGTGAGGGAGGTGGGGATTTTGAAGAAAGATCCTGATCAATTGAAGAAGCAGATTGAGAACTTGGAAATGATGAAGGCTGATGGTGCTTTGGATAAAGCAAGAAAGCACAAGAAGAGACAGCTACAAGATACACTTAATCTTGTCATAAAGAAGAGGAGGGAATATGAAGACAAAATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGGTGCTGCATCATCCTCGGCAACAGATTTGGAGAATGATGTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTACCACCACCTCCTTTGCCTCCTCCACCTCCTGGTCCCCCACCTAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGTCCTCCACCTGGTCCTCCTCCAATGATGAGACCTCCACTTCCTCCTGGTCCTCCTCCAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGA

Predicted protein sequences of Glyma05g01510

Limit To All Plant Sequences

>Glyma05g01510.1   sequence type=predicted peptide   gene model=Glyma05g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTTKGGKVMNPTDAYRKEIRKKELKRNKKERKKVREVGILKKDPDQLKKQIENLEMMKADGALDKARKHKKRQLQDTLNLVIKKRREYEDKMREKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGAASSSATDLENDVLTVPPPPPPPPLPDGSSASSADGAVLSASLPLPPPPPMPPKPATAVPTSLPPPPLPPPPPGPPPKEQVANRTLPPPPPPLQQSQPPPPGTSGGEGRNQSAFALIDDSPSKEPGQVQLPPPPPPSQVPPKAGAIQSDGAVLSTENKNSLSSQEIPKMVAGHPPPRQQPPVPGPTLIPSLQPDVLLPGISRFPPPPPPPDMRPSLSVTGLHAQAPPPGMMVPLMPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHIATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAMSKTKPKPAVSTSRAVSGTSGPTIVKSESVSLSSAPKTQSIDDSYTAFLEDMKALGALDG*

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