SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62680 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr5:25165430-25167822 REVERSE LENGTH=616 | SoyBase | E_val: 0 | ISS |
| GO:0006857 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligopeptide transport | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0090449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem glucosinolate loading | SoyBase | N/A | ISS |
| GO:1901349 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0090448 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucosinolate:hydrogen symporter activity | SoyBase | N/A | ISS |
| KOG1237 | KOG | H+/oligopeptide symporter | JGI | ISS | |
| PTHR11654 | Panther | OLIGOPEPTIDE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR11654:SF20 | Panther | NITRATE TRANSPORTER (NRT1) | JGI | ISS | |
| PF00854 | PFAM | POT family | JGI | ISS | |
| UniRef100_Q9FRU6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nitrate transporter NRT1-1 n=1 Tax=Glycine max RepID=Q9FRU6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339B3C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339B3C related cluster n=1 Tax=unknown RepID=UPI0002339B3C | SoyBase | E_val: 0 | ISS |
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Glyma05g01436 not represented in the dataset |
Glyma05g01436 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g10450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g030400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01436.1 sequence type=CDS gene model=Glyma05g01436 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGGAGTAGAGGCTATGGAAAAAAATGAGAAAAGTGTGACAGATGAGGAGCCAAAGATTAACTACAGAGGATGGAAAGTCATGCCCTTTATCATTGGGAATGAAACTTTTGAGAAGCTAGGAACCATTGGAACCTTGGCCAACCTCTTAGTCTATCTTACAACCGTCTTCAACTTGAGCAGTCTTGCAGCTACAAATATTGTCAACATCTTTAATGGCAGCGCCAGTTTATCTACCTTGCTCGGGGCTTTTCTTTGTGACACTTATTTTGGCCGCTACAAGACACTGGGATTCTCCACAATGGCTTCTTTTCTGGGGTTGCTTGTTATACAACTAACAGCATGGATTAAGAAAATGCATCCACCTCACTGTGGAAGAGATAGCATCACATGCATAGGCCCAACCACAGGGCAAATGGGATTTCTACTTGCTGGATTTGGACTTCTAATTGTGGGAGCTGCAGGGATTAGACCTTGTAACTTAGCATTTGGAGTTGATCAGTTCAACCCCAACACTGAGTCTGGAAAGAAGGGAATCAATAGCTTCTTCAATTGGTACTTCTTTACCTTCACATTTGCTCAGATGGTGTCTTTGTCACTAATTGTCTACATACAGTCAAACGTGAGCTGGGCAATAGGGTTGGGAATTCCTGCGGCTTTGATGTTAGTCTCTTGCACACTCTACTACATGGGAAGCAATTATTACGTAAAAGTTAAAGCAACTGGTCCAGCTCCACTAACAAGTATAGCTCAAGCTATAGTTGTGGCTGTAAAGAAAAGAAGACTGAATCTATCAGAATATCCATTGGATTCGCTCTTTACCTATATTTCTCCCCAGTCTATTAACTCCAAGCTTCCTCATACGTCTCAGTTCAGGTTACTGGACAAAGCTGCAATTATAACCCCACAAGATGGCATAAACCCAGACGGGTCTGCATCAGATCCTTGGAGTCTTTGCAGCATGCAGCAAGTGGAAGAGCTGAAATGCTTGCTGAGAGTGATCCCCATTTGGGTTGCAGGCATTATCTTCTACGTTGCAATTGTCCAACAGAACACAATGTTGGTCTTCCAAGCCCTTCAATCTGATAGACGCGTTCTCAACACCAACTTCAAGATCCCTGCAGCCTCCTACACCATCTTCCAGATGCTAAGCCTAACCATATGGTTACCAATCTACGACCGAATCCTCGTGCCTTCGCTCCAAAGGGTCACCAAAAAAGAGGGTGGCATCACAGTTCTTCAAAGGATGGGCTTTGGCATGTTCCTCTCTATACTATGCACAATGGTGTCTGGTGTGGTAGAAGAACGGAGAAGAACACTAGCTTTAACTAATCCTATAGGAGTAGAGCCAAGAAAAGGTGCTATTTCTTCAATGTCAGGTCTATGGTTGGTTCCTCAGTTAACACTGGCAGGGCTATCTGATGCATTCACGATTGTGGGACAAGTTGAATTTTTCTACAAACAGTTCCCTGAGAACATGAAAAGCCTTGCAGGGTCTCTATTTTTCTGTGGTCTTGCGGGATCAAGTTATTTGAGTAGTTTGCTGATTTCTATTATCAATAGGGTGACGGCTAAATCCTTAACTGGGAATTGGTTGCCTCAGGATCTCAACCAGGGGAGGTTGGATTATTTTTATTACATGATAACTGCTATAGAAGTCGTTAATTTCGGTTACTTTATATTGTGTGCCAAGTGGTATAGATACAAAGGGACTGGTCCTAGCAGAAGTGGTGACCTTGAACTCGATCAAGTATCCAAACCATATGAAAGAACTGTTAACAGTGTCTAA
>Glyma05g01436.1 sequence type=predicted peptide gene model=Glyma05g01436 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGVEAMEKNEKSVTDEEPKINYRGWKVMPFIIGNETFEKLGTIGTLANLLVYLTTVFNLSSLAATNIVNIFNGSASLSTLLGAFLCDTYFGRYKTLGFSTMASFLGLLVIQLTAWIKKMHPPHCGRDSITCIGPTTGQMGFLLAGFGLLIVGAAGIRPCNLAFGVDQFNPNTESGKKGINSFFNWYFFTFTFAQMVSLSLIVYIQSNVSWAIGLGIPAALMLVSCTLYYMGSNYYVKVKATGPAPLTSIAQAIVVAVKKRRLNLSEYPLDSLFTYISPQSINSKLPHTSQFRLLDKAAIITPQDGINPDGSASDPWSLCSMQQVEELKCLLRVIPIWVAGIIFYVAIVQQNTMLVFQALQSDRRVLNTNFKIPAASYTIFQMLSLTIWLPIYDRILVPSLQRVTKKEGGITVLQRMGFGMFLSILCTMVSGVVEERRRTLALTNPIGVEPRKGAISSMSGLWLVPQLTLAGLSDAFTIVGQVEFFYKQFPENMKSLAGSLFFCGLAGSSYLSSLLISIINRVTAKSLTGNWLPQDLNQGRLDYFYYMITAIEVVNFGYFILCAKWYRYKGTGPSRSGDLELDQVSKPYERTVNSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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