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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62740 | AT | Annotation by Michelle Graham. TAIR10: SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043424 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding | SoyBase | N/A | ISS |
| KOG2620 | KOG | Prohibitins and stomatins of the PID superfamily | JGI | ISS | |
| PTHR10264 | Panther | STOMATIN-RELATED | JGI | ISS | |
| PTHR10264:SF25 | Panther | INTEGRAL MEMBRANE PROTEINASE | JGI | ISS | |
| PF01145 | PFAM | SPFH domain / Band 7 family | JGI | ISS | |
| UniRef100_C6TJ60 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ60_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G8FVT2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hypersensitive induced reaction protein 3 n=1 Tax=Glycine max RepID=G8FVT2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g01360 not represented in the dataset |
Glyma05g01360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g10520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g029800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01360.2 sequence type=transcript gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGAAATTGTGAACAGTATTGTTCTTGCGTTGTTTCGGAGGGTCAATTGTTTGGTTGAGCAAAAATCTGAAATTCAATTTCAGTTGAAAGCAAATGGGGAATCTTTTTTGTTGTGTGAAAGTTGATCAATCTACGGTGGCTATGAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGTTGTGAGACCAAGACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAACTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTGGATGATGCTTTTGAGCAGAAAAGTGAAATTGCCAGAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGTGCATGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTAATGAGAAGGCAGAGTCTAAGTATCTTTCTGGTCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAAGTGCAAGAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGACATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTTATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTAGTCAAATTCGAGACGGACTTCTTCAGGCTTCTCATCAGTAGCCTCTACTCCACCTAGATCTTGTATTTGGTTTGTATGGGAGTATGTTTGAAGCTATAGCGCCTGTGGTTGTATACCTGTATTTCTGTGCAGTGTGTTTTGTGATTTTGTTTTAGAATAAACTGCAAAATTGATCTTCCAAAGATTATGGCATCACCTCATTAATGTTTTTAAGATTTTTGTTATCAAATTAGTCCCACAAATATCTAAAATGTTACCACATTTGTTCACATAGAGGACTAAAGAAGTGGTAACACAAAATAATTTAGTATTTGATTTGTATCTCTGTGGGATTGATTTGTTGACCAAAATCTTTGGAGGACCAGTTCAAGGACTTACTCTATCGATTTATACTTTCAGTTTCAGGCAGTCAAGTAATACTGTATATTCTGTTGTCTATATTGTGGATCATGCATAACTAAACTATCAAGTATCCCTGTATATACAAGTTGTCTAAATTGTGAAAGTTACATATACAAGAAATTTCCTAT >Glyma05g01360.3 sequence type=transcript gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAGGTTGTGATTGGCTTGTCATGCCAGTTAGCTTGCAATTCTGGGTTTCTGACAGACAGTATTTAAATTGTATTTATGTATATGACTATGACTTTGGAATGTATACGGCTAAAACATATACGTCATGATTAATGGTGGTGATGAATATATCAAGAATAGCAAGTATTTGTGTACTCTCAGTATTCGAGAGCTACTTGCTTATAATTTATGCAAGAACTCTCCTAAGTCAGCTTTGCTTTCGAAGCCTTTATCTTTGAGTTGAAAGCAAATGGGGAATCTTTTTTGTTGTGTGAAAGTTGATCAATCTACGGTGGCTATGAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGTTGTGAGACCAAGACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAACTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTGGATGATGCTTTTGAGCAGAAAAGTGAAATTGCCAGAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGTGCATGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATCTTGCTAATCAAACGAGCTGAGGGCGAGGCAGAGTCTAAGTATCTTTCTGGTCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAAGTGCAAGAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGACATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTTATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTAGTCAAATTCGAGACGGACTTCTTCAGGCTTCTCATCAGTAGCCTCTACTCCACCTAGATCTTGTATTTGGTTTGTATGGGAGTATGTTTGAAGCTATAGCGCCTGTGGTTGTATACCTGTATTTCTGTGCAGTGTGTTTTGTGATTTTGTTTTAGAATAAACTGCAAAATTGATCTTCCAAAGATTATGGCATCACCTCATTAATGTTTTTAAGATTTTTGTTATCAAATTAGTCCCACAAATATCTAAAATGTTACCACATTTGTTCACATAGAGGACTAAAGAAGTGGTAACACAAAATAATTTAGTATTTGATTTGTATCTCTGTGGGATTGATTTGTTGACCAAAATCTTTGGAGGACCAGTTCAAGGACTTACTCTATCGATTTATACTTTCAGTTTCAGGCAGTCAAGTAATACTGTATATTCTGTTGTCTATATTGTGGATCATGCATAACTAAACTATCAAGTATCCCTGTATATACAAGTTGTCTAAATTGTGAAAGTTACATATACAAGAAATTTCCTAT
>Glyma05g01360.1 sequence type=CDS gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAATCTTTTTTGTTGTGTGAAAGTTGATCAATCTACGGTGGCTATGAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGTTGTGAGACCAAGACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAACTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTGGATGATGCTTTTGAGCAGAAAAGTGAAATTGCCAGAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGTGCATGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATCTTGCTAATCAAACGAGCTGAGGGCGAGGCAGAGTCTAAGTATCTTTCTGGTCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAAGTGCAAGAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGACATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTTATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTAGTCAAATTCGAGACGGACTTCTTCAGGCTTCTCATCAGTAG >Glyma05g01360.2 sequence type=CDS gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAATCTTTTTTGTTGTGTGAAAGTTGATCAATCTACGGTGGCTATGAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGTTGTGAGACCAAGACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAACTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTGGATGATGCTTTTGAGCAGAAAAGTGAAATTGCCAGAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGTGCATGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTAATGAGAAGGCAGAGTCTAAGTATCTTTCTGGTCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAAGTGCAAGAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGACATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTTATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTAGTCAAATTCGAGACGGACTTCTTCAGGCTTCTCATCAGTAG >Glyma05g01360.3 sequence type=CDS gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAATCTTTTTTGTTGTGTGAAAGTTGATCAATCTACGGTGGCTATGAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGTTGTGAGACCAAGACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAACTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTGGATGATGCTTTTGAGCAGAAAAGTGAAATTGCCAGAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGTGCATGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATCTTGCTAATCAAACGAGCTGAGGGCGAGGCAGAGTCTAAGTATCTTTCTGGTCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAAGTGCAAGAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGACATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTTATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTAGTCAAATTCGAGACGGACTTCTTCAGGCTTCTCATCAGTAG
>Glyma05g01360.1 sequence type=predicted peptide gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNLFCCVKVDQSTVAMREGFGRFEKVLQPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKSEIARAVEEELEKAMSAYGYEIVQTLIVDIDPDVHVKRAMNEINAAARLRLAANEKAEAEKILLIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSARDVMDMVLVTQYFDTMKDIGAASKSSAVFIPHGPGAVRDVASQIRDGLLQASHQ* >Glyma05g01360.2 sequence type=predicted peptide gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNLFCCVKVDQSTVAMREGFGRFEKVLQPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKSEIARAVEEELEKAMSAYGYEIVQTLIVDIDPDVHVKRAMNEINAAARLRLAANEKAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSARDVMDMVLVTQYFDTMKDIGAASKSSAVFIPHGPGAVRDVASQIRDGLLQASHQ* >Glyma05g01360.3 sequence type=predicted peptide gene model=Glyma05g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNLFCCVKVDQSTVAMREGFGRFEKVLQPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKSEIARAVEEELEKAMSAYGYEIVQTLIVDIDPDVHVKRAMNEINAAARLRLAANEKAEAEKILLIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSARDVMDMVLVTQYFDTMKDIGAASKSSAVFIPHGPGAVRDVASQIRDGLLQASHQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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