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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74720 | AT | Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr1:28075173-28078418 FORWARD LENGTH=1081 | SoyBase | E_val: 0 | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0048513 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ development | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR10024 | Panther | SYNAPTOTAGMIN | JGI | ISS | |
| PTHR10024:SF97 | Panther | C2 DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| PF08372 | PFAM | Plant phosphoribosyltransferase C-terminal | JGI | ISS | |
| UniRef100_G7JPX5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Unc-13-like protein n=1 Tax=Medicago truncatula RepID=G7JPX5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JZS2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZS2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g01340 not represented in the dataset |
Glyma05g01340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g029600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01340.1 sequence type=CDS gene model=Glyma05g01340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGACGACGCCGTTTCAGCAACCGCCCCAAACCGTACGGAGACTGGTCGTGGAAGTGGTGGACGCGCGCAACCTGCTCCCCAAGGATGGGCAAGGCAGCTCCAGCCCTTACGTGGTGGCGGACTTCGACGGCCAGAGGAAGCGAACCACGACCCGGTTCAAGGAGCTGAACCCGGTCTGGAACGAGCCTTTGGAGTTCATCGTCTCCGACCCAGAGAACATGGAGTTCGAGGAGCTCGAAGTGGAGGTGTACAATGACAAGAAGTTCGGCAACGGAAGCGGCCGCAAGAACCACTTCCTCGGGAGGGTTAAGCTCTACGGAACTCAGTTTTCAAGAAGAGGCGAAGAAGCTCTTGTTTACTACACGCTCGAGAAGAGAAGCGTGTTCAGTTGGATAAGAGGAGAAATTGGCCTCAGGATTTATTACTACGACGAGATGCTTATGGAAGAGGAGAAACCGCCGCCGCCGCCGCAGCAGCAGCAGGAGGAGCAAGGTGAGAGAACGGAACAAGACCGGAACAAGCCGCCGCCGGGGGTGGTGGTTGTCGAGGAGGGACGGGTTTTCGAGGCTCCTGGAGCGATGGAGCAATGCGTGCCTCTTCCTTCAGGTCCTCCTCATTCGCCGCGTGTTGTGGTCGTGGCTGAATCTCCGCCGCCGGTGGTTCATGTTTCGCAGGATCCGCCGTTGGCGGAAATGTGTGAGCCTCCGGCGTCGGAAATGCAGTTCCACCCCGAGGTGAGGAAAATGCAGGCCAACAGAGGGAATAGGGTGAAGATTTTGAAGCGGCCGAACGGTGATTACTTGCCTAAAGATATTTCTGGAAAGAAAACTGGTAATGAGTCTGAGCGAGTTCATCCCTTCGATCTGGTGGAGCCGATGCAGTACCTGTTTGTGAAAATCTGGAAGGCCCGTGGGCTCGCTCCTCCCAGTGAAGGCCCAATCGTGAGGGTTAGGATGTCGAGCCAATCCAGGAGATCCAATCCCGCAAGTTACAGGCCCAGCGAGCCCCCCGATTCGCCGGAATGGAACCAGACATTCGCGCTGAGTTACAACAACACGAACGATGCAAACAGCGCCACACTGGAGATTTCGGTTTGGGATTCCCCGACAGAGAATTTCCTCGGTGGCGTTTGCTTCGACCTCTCCGACGTTCCGGTGAGAGATCCTCCGGACAGTCCTTTGGCGCCGCAATGGTACCGCCTCGAAGGAGGAACCGCCGATCAGAATCCCGGGAGAGTCTCCGGTGACATTCAGCTTTCCGTGTGGATCGGGACGCAATCCGACGACGCGTTCCCGGAAGCGTGGATCTCAGACGCACCCTACGTGGCTCACACTCGATCCAAGGTTTATCAATCGCCAAAGCTCTGGTACCTGCGCGTGACGGTGGTGGAAGCGCAAGACCTGAATATTGCTCCGAATCTGCCTCCACTGACAGCGCCGGAAGTGAGGGTGAAGGTGGAATTAGGGTTCCAATCGCAGCGAACAAGGAGAGGATCCATGAACCACCGCAGCTTATCGTTCCACTGGAACGAGGACCTTCTATTCGTAGCCGGTGAGCCACTGGAAGATTCTGTCATAGTTCTGTTGGAAGATCGAACCACCAAGGAACCGGCGCTGCTAGGCCACATCGTGATTCCTCTGAGCTCAATCGAGCAGCGAATCGACGAGCGCCACGTGGCAGCAAAATGGTTCACCTTAGAGGGCGGGCCCTACTGCGGCAGAGTCCAGATGCGCCTCTGCCTGGAGGGAGGGTACCACGTGCTGGACGAAGCGGCGCACGTGTGCAGCGACTTCCGTCCCACGGCGAAACAGTTATGGAAGCCGGCGGTGGGGATTCTAGAGCTTGGAATTCTTGGCGCTCGGGGGCTGCTACCGATGAAATCCAAAGGCGGTGGAAAGGGGTCCACGGATGCTTACTGCGTGGCAAAGTATGGGAAGAAGTGGGTCCGGACCCGAACCGTAACCGATACCTTCGATCCACGGTGGAACGAGCAGTACACGTGGCAGGTATACGACCCCTGCACGGTCCTCACCGTGGGAGTGTTCGACAACTGGCGCATGTTCGCTGACGTGTCGGAGGACCACAGGCCCGATTGCCGCATCGGCAAGGTACGCATACGCGTGTCTACGCTGGAGAGCAACAGAATATACACTAACTCCTACCCCCTCCTCGTCCTCACGCGAACCGGCTTGAAAAAAATGGGCGAAATCGAGTTAGCGGTTCGCTTCGCCTGCCCCTCCCTGCTGCCCGACACGTGTGCGGTGTACGCCCAGCCCCTGCTTCCGCGTATGCACTACCTCCGCCCGCTCGGGGTGGCGCAGCAGGAGGCTCTCCGCGGCGCCTCCACGAAGATGGTGGCGCAGTGGCTGGCGCGCTCGGAGCCGCCGCTGGGGCACGAGGTGGTTCGGTACATGCTGGACGCAGACTCGCACGTGTGGAGCATGAGGAAGAGCAAAGCCAATTGGTTCAGAATCGTGGCGGTGTTGGCTTGGGCGGTTGGACTGGCAAAATGGTTAGATGACATAAGAAGGTGGAAGAATCCAGTTACCACAGTGCTACTCCACATTCTTTACTTAGTCCTCGTTTGGTATCCGGATTTGATTGTTCCCACCGCCTTCTTATATGTTGTTTTAATCGGAATATGGTATTACCGGTTCAGACCCAAGATTCCGGCCGGGATGGATACCCGCTTGTCGCAGGCCGAAGCGGTTGATCCGGACGAGCTGGACGAGGAATTCGACACCATGCCAAGTTCCAAACCACCCGATGTAATTCGAATGCGATATGATAGGTTAAGAATGCTGGCTGCAAGGGTGCAAACAGTGTTGGGTGATTTTGCCACACAGGGTGAGAGGCTTCAAGCATTGGTTAGTTGGAGGGACCCTAGGGCTACAAAATTGTTCATTGGAGTCTGCCTTACCATAACTGTAGCACTCTATGCTATGCCACCAAAAATGGTGGCGGTGGCGTTAGGCTTTTATTACCTCCGCCACCCCATGTTCCGGAACCCAATGCCCTCCGCCACGTTGAACTTTTTCCGGCGACTTCCCAGCCTCTCGGATCGCTTGATGTAG
>Glyma05g01340.1 sequence type=predicted peptide gene model=Glyma05g01340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMTTPFQQPPQTVRRLVVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNPVWNEPLEFIVSDPENMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSRRGEEALVYYTLEKRSVFSWIRGEIGLRIYYYDEMLMEEEKPPPPPQQQQEEQGERTEQDRNKPPPGVVVVEEGRVFEAPGAMEQCVPLPSGPPHSPRVVVVAESPPPVVHVSQDPPLAEMCEPPASEMQFHPEVRKMQANRGNRVKILKRPNGDYLPKDISGKKTGNESERVHPFDLVEPMQYLFVKIWKARGLAPPSEGPIVRVRMSSQSRRSNPASYRPSEPPDSPEWNQTFALSYNNTNDANSATLEISVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGGTADQNPGRVSGDIQLSVWIGTQSDDAFPEAWISDAPYVAHTRSKVYQSPKLWYLRVTVVEAQDLNIAPNLPPLTAPEVRVKVELGFQSQRTRRGSMNHRSLSFHWNEDLLFVAGEPLEDSVIVLLEDRTTKEPALLGHIVIPLSSIEQRIDERHVAAKWFTLEGGPYCGRVQMRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAVGILELGILGARGLLPMKSKGGGKGSTDAYCVAKYGKKWVRTRTVTDTFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVSEDHRPDCRIGKVRIRVSTLESNRIYTNSYPLLVLTRTGLKKMGEIELAVRFACPSLLPDTCAVYAQPLLPRMHYLRPLGVAQQEALRGASTKMVAQWLARSEPPLGHEVVRYMLDADSHVWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTAFLYVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDVIRMRYDRLRMLAARVQTVLGDFATQGERLQALVSWRDPRATKLFIGVCLTITVALYAMPPKMVAVALGFYYLRHPMFRNPMPSATLNFFRRLPSLSDRLM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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