Glyma05g01305 - SoyBase

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Report for Sequence Feature Glyma05g01305

Feature Type:	gene_model
Chromosome:	Gm05
Start:	830261
stop:	833209
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g01305

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62530	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 12A1 \| chr5:25099768-25103159 REVERSE LENGTH=556	SoyBase	E_val: 0	ISS
GO:0006560	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010133	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline catabolic process to glutamate	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0072593	GO-bp	Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-pyrroline-5-carboxylate dehydrogenase activity	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF8	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_G7JPY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Delta-1-pyrroline-5-carboxylate dehydrogenase 1 protein n=2 Tax=Medicago RepID=G7JPY4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339CC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339CC0 related cluster n=1 Tax=unknown RepID=UPI0002339CC0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g01305

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01305 not represented in the dataset	Glyma05g01305 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g01305 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g029100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g01305

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g01305

Limit To All Plant Sequences

>Glyma05g01305.1   sequence type=CDS   gene model=Glyma05g01305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAAATGTTGCGCCTGCTTCATAACTGTGGTTTACCTCTAGAAGATGTAGACTTCATAAATTCTGACGGGAAGACAATGAACAAACTGTTACTGGAGGCAAATCCACGGATGACGCTTTTTACTGGTAGTTCAAGAGTGGCAGAGAAGTTGGCTGTTGATTTGAAGGGCCGCGTTAAATTGGAAGATGCTGGATTTGACTGGAAAATACTGGGCCCTGATGTCCTTCAGGAAGATTACATAGCCTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCGGCACAGTCATTGTTATTTATGCATGAGAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGACAGAAGAAAATTGGCAGACTTGACAGTCGGCCCAGTTCTCACAGTTACGACTGATTCAATGCTTGAACACATCAATAAGTTGCTTGAGATACCAGGATCAAAGTTGCTATTTGGGGGTCAACCTTTAGAGGATCATTCAATTCCACCTATTTATGGTGCTATGAAACCAACAGCTGTCTATGTTCCTCTTGAGGAAATTATGAAGGCTAAGAATTTTGAGCTTGTGACAAGAGAAATATTTGGACCATTTCAGATTGTTACGGATTACAAAAGCAGTCAACTATCAGTTGTATTGGATGCTTTGGAAAGAATGCATAACCATTTAACAGCTGCTGTAGTTTCCAATGATCCTTTGTTTTTACAGGAAGTCATTGGCCAATCAGTAAATGGTACTGCTTATGCTGGTTTAAGAGCAAGGACAACCGGAGCTCCACAGAATCACTGGTTTGGACCCGCTGGTGATGCTAGAGGTGCAGGAATTGGAACACCAGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAATAATCTATGATTTTGGGCCTGTGCCAAAGAATTGGGAAGTTCCTCCTTCTACTTGA

Predicted protein sequences of Glyma05g01305

Limit To All Plant Sequences

>Glyma05g01305.1   sequence type=predicted peptide   gene model=Glyma05g01305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQMLRLLHNCGLPLEDVDFINSDGKTMNKLLLEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVLQEDYIAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLLSKLKDLADRRKLADLTVGPVLTVTTDSMLEHINKLLEIPGSKLLFGGQPLEDHSIPPIYGAMKPTAVYVPLEEIMKAKNFELVTREIFGPFQIVTDYKSSQLSVVLDALERMHNHLTAAVVSNDPLFLQEVIGQSVNGTAYAGLRARTTGAPQNHWFGPAGDARGAGIGTPEAIKLVWSCHREIIYDFGPVPKNWEVPPST*

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