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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02800 | AT | Annotation by Michelle Graham. TAIR10: protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426 | SoyBase | E_val: 9.00E-176 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF897 | Panther | JGI | ISS | ||
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_G7JQX5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase 2B n=1 Tax=Medicago truncatula RepID=G7JQX5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339CBB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339CBB related cluster n=1 Tax=unknown RepID=UPI0002339CBB | SoyBase | E_val: 0 | ISS |
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Glyma05g01210 not represented in the dataset |
Glyma05g01210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g028300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01210.2 sequence type=transcript gene model=Glyma05g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATAAACGTAAAAGTAAGACAACTCAACACTATAATCTGGTTCTCTCTGTTTTCATGTTCTTCTCTGGAAATACGGGAGAAGAACAAGATGCAAGAGAACCACAAGGCATAATGCATTTCGAGATTGACATAGATGTCACGTTGCATGACAAGAATTTAGCCAGATTGAATCCTTTTTATTGTTGTTGTTGGCTTTTCAGAAAAGGTTAATTGTTTCCTCTCATGGGAAATTGCTGTGGAACTCGTTGCAAGGTTGATGACACTTTGAACTCCAACCACAGTTCTGCAGATGTTACCAAAGTTCACCGTAGAAGCACCCATTTGTTAGTTCATTCAAATCTAAACGGGCATGGATACAGTGATGAAGGCAAACCTGAGATTATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCTTCCCCGCATTTAAAACCCTTCACATTGCATGATCTTAAGAAGGCCACTAGAAATTTCCAGCTTGATAGTCTTATTGGAGAAGGGGGATTTGGTTATGTGTATAAGGGGTTGATTAATGATGGTAAATCCTTTGGGCCTACAATGCCTAAATCTGGAACTGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTCAACTATCTTGGACAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGTCTAGAAGGAGATAACCGACTTCTAGTATATGAGTACATGCCCAACAGAAGCTTGGAAGATCATATATTTCGAAAAGGCACACAACCACTTCCTTGGGCAACAAGAGTCAAGATTGCTATTGGTGCTGCTCAAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATATTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCGTTCTTATGTTTCCACTCAAGTCCTGGGAACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACTTCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATTTGGTAGAGTGGTCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATCATGGACACCAAGTTAGAAGGGCAATACCCACAGAAGGCAGCTTATACAATTGCAATTATTGCCTTACAATGTATTAGTGAGGCCAAGACTAGACCGCAGATGTTTGAGGTTTTGGCTGCCTTGGAACACCTGCGAGCCATTAGACATTCAGCTAGCCCATCTGGAGAAGAGAAGTCCATGCCAAGCCCTATGTTAAAATCCCCTTTGGGACATAACCATCCAGAGTTGTGAAATCCCAAAGTTGGTGTATTTTCTCTTTAAGTTAGAACCTCTTTTTATGGGTCATGTTAGGTGATAGCACCCATGAGAGAGTTTAGTGGACTGTTACTTTACTTATGGATACATAACTTTGGTCACAGAGATGTTATCAGCATCAAAATGCTTTGTCTTATCCATTTACTATCAGGAGGAATCATTTGGTTCCTGCCATCATAACAGCATTCTTGCTACAAGAGTTTCAGTTTAGTTGCACGTAAATGATTCTGGT
>Glyma05g01210.1 sequence type=CDS gene model=Glyma05g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCATCATTAATGGGAATGTTACCAAAGTTCACCGTAGAAGCACCCATTTGTTAGTTCATTCAAATCTAAACGGGCATGGATACAGTGATGAAGGCAAACCTGAGATTATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCTTCCCCGCATTTAAAACCCTTCACATTGCATGATCTTAAGAAGGCCACTAGAAATTTCCAGCTTGATAGTCTTATTGGAGAAGGGGGATTTGGTTATGTGTATAAGGGGTTGATTAATGATGGTAAATCCTTTGGGCCTACAATGCCTAAATCTGGAACTGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTCAACTATCTTGGACAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGTCTAGAAGGAGATAACCGACTTCTAGTATATGAGTACATGCCCAACAGAAGCTTGGAAGATCATATATTTCGAAAAGGCACACAACCACTTCCTTGGGCAACAAGAGTCAAGATTGCTATTGGTGCTGCTCAAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATATTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCGTTCTTATGTTTCCACTCAAGTCCTGGGAACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACTTCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATTTGGTAGAGTGGTCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATCATGGACACCAAGTTAGAAGGGCAATACCCACAGAAGGCAGCTTATACAATTGCAATTATTGCCTTACAATGTATTAGTGAGGCCAAGACTAGACCGCAGATGTTTGAGGTTTTGGCTGCCTTGGAACACCTGCGAGCCATTAGACATTCAGCTAGCCCATCTGGAGAAGAGAAGTCCATGCCAAGCCCTATGTTAAAATCCCCTTTGGGACATAACCATCCAGAGTTGTGA >Glyma05g01210.2 sequence type=CDS gene model=Glyma05g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAATTGCTGTGGAACTCGTTGCAAGGTTGATGACACTTTGAACTCCAACCACAGTTCTGCAGATGTTACCAAAGTTCACCGTAGAAGCACCCATTTGTTAGTTCATTCAAATCTAAACGGGCATGGATACAGTGATGAAGGCAAACCTGAGATTATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCTTCCCCGCATTTAAAACCCTTCACATTGCATGATCTTAAGAAGGCCACTAGAAATTTCCAGCTTGATAGTCTTATTGGAGAAGGGGGATTTGGTTATGTGTATAAGGGGTTGATTAATGATGGTAAATCCTTTGGGCCTACAATGCCTAAATCTGGAACTGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTCAACTATCTTGGACAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGTCTAGAAGGAGATAACCGACTTCTAGTATATGAGTACATGCCCAACAGAAGCTTGGAAGATCATATATTTCGAAAAGGCACACAACCACTTCCTTGGGCAACAAGAGTCAAGATTGCTATTGGTGCTGCTCAAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATATTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCGTTCTTATGTTTCCACTCAAGTCCTGGGAACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACTTCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATTTGGTAGAGTGGTCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATCATGGACACCAAGTTAGAAGGGCAATACCCACAGAAGGCAGCTTATACAATTGCAATTATTGCCTTACAATGTATTAGTGAGGCCAAGACTAGACCGCAGATGTTTGAGGTTTTGGCTGCCTTGGAACACCTGCGAGCCATTAGACATTCAGCTAGCCCATCTGGAGAAGAGAAGTCCATGCCAAGCCCTATGTTAAAATCCCCTTTGGGACATAACCATCCAGAGTTGTGA
>Glyma05g01210.1 sequence type=predicted peptide gene model=Glyma05g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLIINGNVTKVHRRSTHLLVHSNLNGHGYSDEGKPEIILPTPRSEGDILSSPHLKPFTLHDLKKATRNFQLDSLIGEGGFGYVYKGLINDGKSFGPTMPKSGTVVAVKKLKPEGFQGHKEWLSEVNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYMPNRSLEDHIFRKGTQPLPWATRVKIAIGAAQGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVEHNLVEWSRPYLGDRRKLFRIMDTKLEGQYPQKAAYTIAIIALQCISEAKTRPQMFEVLAALEHLRAIRHSASPSGEEKSMPSPMLKSPLGHNHPEL* >Glyma05g01210.2 sequence type=predicted peptide gene model=Glyma05g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNCCGTRCKVDDTLNSNHSSADVTKVHRRSTHLLVHSNLNGHGYSDEGKPEIILPTPRSEGDILSSPHLKPFTLHDLKKATRNFQLDSLIGEGGFGYVYKGLINDGKSFGPTMPKSGTVVAVKKLKPEGFQGHKEWLSEVNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYMPNRSLEDHIFRKGTQPLPWATRVKIAIGAAQGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVEHNLVEWSRPYLGDRRKLFRIMDTKLEGQYPQKAAYTIAIIALQCISEAKTRPQMFEVLAALEHLRAIRHSASPSGEEKSMPSPMLKSPLGHNHPEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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