SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02870 | AT | Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467 | SoyBase | E_val: 2.00E-147 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR24413 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24413:SF217 | Panther | JGI | ISS | ||
| PF01344 | PFAM | Kelch motif | JGI | ISS | |
| UniRef100_G7JQX6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JQX6_MEDTR | SoyBase | E_val: 1.00E-155 | ISS |
| UniRef100_UPI0002339CBA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339CBA related cluster n=1 Tax=unknown RepID=UPI0002339CBA | SoyBase | E_val: 0 | ISS |
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Glyma05g01195 not represented in the dataset |
Glyma05g01195 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g10690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g028200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01195.2 sequence type=transcript gene model=Glyma05g01195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCTCACAGTCAGTTGCAGAGGTTGGCGAAAGAATAGCGATTCATATATATATAAATTTAGAGAGAGAAAAAATACCCAGTTCAGTTTTCTAGTTCCTTGTGCTAAATTCGGTCCATTGTTGTTTCAAGGACGTGCCAATTTCATGTGAGCAGGAGAATTAATGGGTACTTTACAGTGCTTTTCGGTTGAAGGAGATGAAAAACCAAGAAAGTTATCCAAACTTTCAGATGATCCTCAGGAGGAGGAGGAGGGTATGCAGATTGATATGGTTTCTCTTTTCCCTTCCCAGCACCAAAGCAATGATCAAAACCATGCACCCATGGCAATTGAGGAGCGTGATCCAAGATGGCTTATTAACCAGGATGTCTCAATCGGTGTTGTCCTACGCTTGTCAAGGTCTGAGTATGGTTCAATTGTCTCACTGAACCAGAGTTTCCGGTCCCTGATTCAGACCGGAGAACTCTATCGGCTCAGAAGGAAAATGGGAATTGTAGAATACTGGGTTTACTTCTCTTTCAATCTTCTTGAATGGGAGGTGTTTGATCCAATGAATGGCTATTGGATGAAATTGCCTAGAATGCCTTCCAATCAGTATGACTGCTTCACGTTTTCGGATAAGGAGTCTTTGGCTGTTGGCACAGAACTTCTTGTGTTTGGAAAGGCAATAGAGGCTCCTGTTGTTTATGGATACAGCCTCTTGACCCACACTTGGTCACATGGTACTCAGATGAGTGTTCCTAGATGCTTGTTTGCATCTGCGAGCCGCGGAGAAATAGCCATAGTGGCTGGTGGGTGTAATCCACTAGGCAAGATCCTGAGTGTGGCTGAGATGTATAACTCAGACACCAAGACATGGGAGGCTCTCCCAAACATGAACAAAGCAAGGAAGATGAGTGCTGGTGTGTTCATGGATGGGAAATTTTATGCCCTTGGTGGAATGGGAGAAGATGGTAATAAGCTGACATGTGGTGAGGAGTATGATTTGGAGACAAAGGAATGGCGTGTGATCCCTAACATGCTCCCTCCGCGAACAAGCGAAAGACAAGACACTACTGAGGCACCACCTTTGGTTGCAGTTGTGAACAATGTGTTGTACGCTGCAGATTATGCTCAGAGGGTGCTGAGGCGGTATGAGAAAGAGAGGAACAAATGGGTCTACATTGGAAGTCTTCCTGAGATAACATCCTCTATGAATGGTTGGGGATTAGCATTTCGAGCATGTGGAGATCGAATAGTTGTTATTGCTGGGGAAAGTGCTCATGGTGGAAGGGTGGTTGAAATTAATTCTTGGATCCCAGATGGAGGTGCACCACTGTGGAACTTGCTTGCCAGAAGGCACATTGGTGGGAGCTTTGTGTATAATTGCGCAGTGATGGGATGCTGAGGTGTTCATGAATAGGGATTTCTGGATTAATTTCTTGCGAAAGGGGTTGACTGTTTCTTTACTTTTCAAGGAGATAGATTGTGGTTCATGGGGTAATACTTGCCCTCTCTTTTTAGGGTAATTTCAGGTCTTATTTAAAATCATATATAGGTGCAGTTTTAGAAGGTTTACAGAATTTCAGTTGATGTTTTCTTTATCTTTTATAATTGGTCTAAATCTTTTCCTAGCTTTATGTTATCGTTAGATCCTATTGAAATGTTGGCATCAT
>Glyma05g01195.1 sequence type=CDS gene model=Glyma05g01195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACTTTACAGTGCTTTTCGGTTGAAGGAGATGAAAAACCAAGAAAGTTATCCAAACTTTCAGATGATCCTCAGGAGGAGGAGGAGGGTATGCAGATTGATATGGTTTCTCTTTTCCCTTCCCAGCACCAAAGCAATGATCAAAACCATGCACCCATGGCAATTGAGGAGCGTGATCCAAGATGGCTTATTAACCAGGATGTCTCAATCGGTGTTGTCCTACGCTTGTCAAGGTCTGAGTATGGTTCAATTGTCTCACTGAACCAGAGTTTCCGGTCCCTGATTCAGACCGGAGAACTCTATCGGCTCAGAAGGAAAATGGGAATTGTAGAATACTGGGTTTACTTCTCTTTCAATCTTCTTGAATGGGAGGTGTTTGATCCAATGAATGGCTATTGGATGAAATTGCCTAGAATGCCTTCCAATCAGTATGACTGCTTCACGTTTTCGGATAAGGAGTCTTTGGCTGTTGGCACAGAACTTCTTGTGTTTGGAAAGGCAATAGAGGCTCCTGTTGTTTATGGATACAGCCTCTTGACCCACACTTGGTCACATGGTACTCAGATGAGTGTTCCTAGATGCTTGTTTGCATCTGCGAGCCGCGGAGAAATAGCCATAGTGGCTGGTGGGTGTAATCCACTAGGCAAGATCCTGAGTGTGGCTGAGATGTATAACTCAGACACCAAGACATGGGAGGCTCTCCCAAACATGAACAAAGCAAGGAAGATGAGTGCTGGTGTGTTCATGGATGGGAAATTTTATGCCCTTGGTGGAATGGGAGAAGATGGTAATAAGCTGACATGTGGTGAGGAGTATGATTTGGAGACAAAGGAATGGCGTGTGATCCCTAACATGCTCCCTCCGCGAACAAGCGAAAGACAAGACACTACTGAGGCACCACCTTTGGTTGCAGTTGTGAACAATGTGTTGTACGCTGCAGATTATGCTCAGAGGGTGCTGAGGCGGTATGAGAAAGAGAGGAACAAATGGGTCTACATTGGAAGTCTTCCTGAGATAACATCCTCTATGAATGGTTGGGGATTAGCATTTCGAGCATGTGGAGATCGAATAGTTGTTATTGCTGGGGAAAGTGCTCATGGTGGAAGGGTGGTTGAAATTAATTCTTGGATCCCAGATGGAGGTGCACCACTGTGGAACTTGCTTGCCAGAAGGCACATTGGTGGGAGCTTTGTGTATAATTGCGCAGTGATGGGATGCTGA >Glyma05g01195.2 sequence type=CDS gene model=Glyma05g01195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACTTTACAGTGCTTTTCGGTTGAAGGAGATGAAAAACCAAGAAAGTTATCCAAACTTTCAGATGATCCTCAGGAGGAGGAGGAGGGTATGCAGATTGATATGGTTTCTCTTTTCCCTTCCCAGCACCAAAGCAATGATCAAAACCATGCACCCATGGCAATTGAGGAGCGTGATCCAAGATGGCTTATTAACCAGGATGTCTCAATCGGTGTTGTCCTACGCTTGTCAAGGTCTGAGTATGGTTCAATTGTCTCACTGAACCAGAGTTTCCGGTCCCTGATTCAGACCGGAGAACTCTATCGGCTCAGAAGGAAAATGGGAATTGTAGAATACTGGGTTTACTTCTCTTTCAATCTTCTTGAATGGGAGGTGTTTGATCCAATGAATGGCTATTGGATGAAATTGCCTAGAATGCCTTCCAATCAGTATGACTGCTTCACGTTTTCGGATAAGGAGTCTTTGGCTGTTGGCACAGAACTTCTTGTGTTTGGAAAGGCAATAGAGGCTCCTGTTGTTTATGGATACAGCCTCTTGACCCACACTTGGTCACATGGTACTCAGATGAGTGTTCCTAGATGCTTGTTTGCATCTGCGAGCCGCGGAGAAATAGCCATAGTGGCTGGTGGGTGTAATCCACTAGGCAAGATCCTGAGTGTGGCTGAGATGTATAACTCAGACACCAAGACATGGGAGGCTCTCCCAAACATGAACAAAGCAAGGAAGATGAGTGCTGGTGTGTTCATGGATGGGAAATTTTATGCCCTTGGTGGAATGGGAGAAGATGGTAATAAGCTGACATGTGGTGAGGAGTATGATTTGGAGACAAAGGAATGGCGTGTGATCCCTAACATGCTCCCTCCGCGAACAAGCGAAAGACAAGACACTACTGAGGCACCACCTTTGGTTGCAGTTGTGAACAATGTGTTGTACGCTGCAGATTATGCTCAGAGGGTGCTGAGGCGGTATGAGAAAGAGAGGAACAAATGGGTCTACATTGGAAGTCTTCCTGAGATAACATCCTCTATGAATGGTTGGGGATTAGCATTTCGAGCATGTGGAGATCGAATAGTTGTTATTGCTGGGGAAAGTGCTCATGGTGGAAGGGTGGTTGAAATTAATTCTTGGATCCCAGATGGAGGTGCACCACTGTGGAACTTGCTTGCCAGAAGGCACATTGGTGGGAGCTTTGTGTATAATTGCGCAGTGATGGGATGCTGA
>Glyma05g01195.1 sequence type=predicted peptide gene model=Glyma05g01195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTLQCFSVEGDEKPRKLSKLSDDPQEEEEGMQIDMVSLFPSQHQSNDQNHAPMAIEERDPRWLINQDVSIGVVLRLSRSEYGSIVSLNQSFRSLIQTGELYRLRRKMGIVEYWVYFSFNLLEWEVFDPMNGYWMKLPRMPSNQYDCFTFSDKESLAVGTELLVFGKAIEAPVVYGYSLLTHTWSHGTQMSVPRCLFASASRGEIAIVAGGCNPLGKILSVAEMYNSDTKTWEALPNMNKARKMSAGVFMDGKFYALGGMGEDGNKLTCGEEYDLETKEWRVIPNMLPPRTSERQDTTEAPPLVAVVNNVLYAADYAQRVLRRYEKERNKWVYIGSLPEITSSMNGWGLAFRACGDRIVVIAGESAHGGRVVEINSWIPDGGAPLWNLLARRHIGGSFVYNCAVMGC* >Glyma05g01195.2 sequence type=predicted peptide gene model=Glyma05g01195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTLQCFSVEGDEKPRKLSKLSDDPQEEEEGMQIDMVSLFPSQHQSNDQNHAPMAIEERDPRWLINQDVSIGVVLRLSRSEYGSIVSLNQSFRSLIQTGELYRLRRKMGIVEYWVYFSFNLLEWEVFDPMNGYWMKLPRMPSNQYDCFTFSDKESLAVGTELLVFGKAIEAPVVYGYSLLTHTWSHGTQMSVPRCLFASASRGEIAIVAGGCNPLGKILSVAEMYNSDTKTWEALPNMNKARKMSAGVFMDGKFYALGGMGEDGNKLTCGEEYDLETKEWRVIPNMLPPRTSERQDTTEAPPLVAVVNNVLYAADYAQRVLRRYEKERNKWVYIGSLPEITSSMNGWGLAFRACGDRIVVIAGESAHGGRVVEINSWIPDGGAPLWNLLARRHIGGSFVYNCAVMGC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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