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Report for Sequence Feature Glyma05g01131

Feature Type:gene_model
Chromosome:Gm05
Start:713468
stop:715721
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g01131
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47620AT Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | chr3:17559004-17560473 FORWARD LENGTH=489 SoyBaseE_val: 2.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010229GO-bp Annotation by Michelle Graham. GO Biological Process: inflorescence development SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11584Panther SERINE/THREONINE PROTEIN KINASE JGI ISS
PTHR11584:SF275Panther SUBFAMILY NOT NAMED JGI ISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_G7JQY3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor PCF2 n=1 Tax=Medicago truncatula RepID=G7JQY3_MEDTR SoyBaseE_val: 2.00E-148ISS
UniRef100_UPI0002339CB9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339CB9 related cluster n=1 Tax=unknown RepID=UPI0002339CB9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g01131
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01131 not represented in the dataset
Glyma05g01131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g01131
ParalogEvidenceComments
Glyma17g10760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g01131 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g027400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g01131
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g01131
>Glyma05g01131.1   sequence type=CDS   gene model=Glyma05g01131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGACGACGATCTCCACCACCATCACCACCGTCAGAACAACTTCCCATTCCAGCTACTTGAGAAGAAAGAAGACCAAGAAACCGCCTCATGCTCCACCTCCTCCCTTTATCCTTCCCTAGCAATCTCCGCGGAACCGAGCACGTCCAATTCCACCCGATCCAACCAGCTCGCCGTGGCGGCTGCGGCGGAGGCTCCTAACAGCAAAAAGCCTCCGCCGAAGCGCACCTCGACCAAGGACCGGCACACGAAGGTGGACGGGCGCGGGCGGCGCATCCGAATGCCGGCCCTCTGCGCCGCCCGCGTCTTCCAGCTCACCCGCGAACTGGGCCACAAGTCGGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCTGCTGTGATCGCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCACCTCCCTGAACATCTCCCTACGCAGTTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGATCCTCCTACTTCAACCCCAATTTCTCCCTCCAACAACATCAACGTAGAACCTTCTTCCCCGGCATAGCCTTTTCCTCCGACAATACCAACAACAACACATCAACACTTCTCAATTTCCAATCCAACACCCTCAACACCACCATGCTGCAGCAGCAGGCCAAGCCGGAGCTTAGCGACGGCGGCGTGCCATCTTCCTTAGACATTTCAGACACAAACACAGAAGACACAACAACAACAACAACAACAACAACAAACCTAAGCCGCAAGAGAAGACCAGCAACTACAGAACAAGACCTATCCTCCAGCACGCAGCAGCACCAAATGGGTAGCTATCTCCTACAATCAAGTGCAGGCGCTATTCCAGCGAGCCACGCCGCCAACATATGGATGGTGGCCAATTCAAACTCGAATCAGGTCATGAGTGGCGATCCCATATGGACCTTCCCACCGGTTAACAACAGTGCTTTGTATCGAGGCACCATGTCTAGCGGCTTGCATTTCATGAATTTTCCTACGCCCGTGGCGTTGTTGCCGAGTCAGCAACTAGGGTCTTCTGGGAATATTGGTGCTGTTGGTGGAAGCAGTCATAATAATCACAATAATAATATCAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTAGTCCTTATCGACCTGTTATTGGCGTTTCGGAATCTCAGGCGAGTGGCTCGCAATCGCATCGTGGAAGTGGCACCGATGATCGACATGATAATAGCTCCAGTCACCACTCCTAG
Predicted protein sequences of Glyma05g01131
>Glyma05g01131.1   sequence type=predicted peptide   gene model=Glyma05g01131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDDDLHHHHHRQNNFPFQLLEKKEDQETASCSTSSLYPSLAISAEPSTSNSTRSNQLAVAAAAEAPNSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQHQRRTFFPGIAFSSDNTNNNTSTLLNFQSNTLNTTMLQQQAKPELSDGGVPSSLDISDTNTEDTTTTTTTTTNLSRKRRPATTEQDLSSSTQQHQMGSYLLQSSAGAIPASHAANIWMVANSNSNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPVALLPSQQLGSSGNIGAVGGSSHNNHNNNINEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGSGTDDRHDNSSSHHS*






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