SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74640 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:28032849-28034659 FORWARD LENGTH=370 | SoyBase | E_val: 1.00E-161 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| UniRef100_G6FT75 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha/beta hydrolase fold protein n=1 Tax=Fischerella sp. JSC-11 RepID=G6FT75_9CYAN | SoyBase | E_val: 8.00E-32 | ISS |
| UniRef100_I1JZP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g01090 not represented in the dataset |
Glyma05g01090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g10810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g027100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g01090.2 sequence type=transcript gene model=Glyma05g01090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGTTCGCGGTCAGCATTTTCTGCTACGGTTGTGTTCCTAATCCTAACCTTGAACTTTAGGTCTCATTGTTGAATTCTTCATTTTCAGCTTTCACCACTATCCCTTCTAATGGCTCTCTCCGCAACATTTATGCCTCCTTCATCCCCAAAATTGAACCTTTATTCCAAAATTCGTAGACCCTTTTACCCTCACTCTGTCAGACTCCTTAAGCCCGTAAAGATTTGGGCTTCAACTACTCTGGATTATTCCAACGTCTCTACCAACGACAAATCCTCCCCTTTGAAGACTAGCAATTGGCAATGGAAGTTCAAGGACAATTTTATAAACATTTATTACGAGGAGCACGTAAAGGAGAGTCCGGAGCCTCCCCAAAATATCTTGATGATGCCAACCATTTCTGATGTTAGCATGGTCGAGGAATGGAGACTAGTGGCTGGAGACATTGTTCAACGTAATGGCAACACCAATTGGCGGGCAACTATTGTTGATTGGCCTGGCCTGGTTATTCTGATCGGCCAAAGATGGATTACAACGCTGATGTCTTGGAAAAATTTCTGGTTGATTTCATCAATTCACCCAATGGACCCAATGAAACACCCAGGAGGACACGCTGCAACTATAGTAGCCCGTGCTGCAAAAAAGGGTCTGGTGAAGCCCAAAGCTATAGCTGCTGTTGCACCAACTTGGGCTGGTCCACTCCCTATTGTGTTTGGTCGAGACTCCAATATGGAAACAAGGTATGGTCTTCTAAGAGGCACGTTAAAGGCCCCTGCTGTTGGCTGGATGATGTATAACATGCTTGTGAGCAACGAGAACGCAATCCAGTCACAGTACAAATCCCATGTATATGCCAACCCTGACAATGTGACTCCAGGAATTGTGGAAAGCAGATATGCATTGACCAAAAGAAAGGGAGCACGTTACTTGCCTGCCGCGTTCCTGACTGGTCAATTAGATCCTGTTACATCTCGCGAGGAGTTCCTTGAGCTCTTCGCGGCTTTGGAGGGAAAGACACCTGTGCTGGTTGTATCAACCAAAGGATCTCCCAAGAGGTCTAAGGCTGAGATGGAAGCTCTCAAGGGAGCTAAAGGGGTTAGCAAGTTTGTGGAAGTGCCAGGTGCTCTTCTTCCCCAAGAGGAGTATCCTGCTTTGGTGGCAGAAGAGCTTTATCAGTTCTTGCAAGAATATTTTGGCACTGTTGCTTAGAATTGACATTTTCTTTTGGCAATTTATCTATCAAACGGGGAATATCAATCTCATTGATGTTCTGCAGCTTTTCCCTTCAGTATGTTGGTGTAGCTTTTGGAGGCACAAATACTAATTGATGGAAAAAGTTTGTCCAAGGGTGTATACATGTTTATGTAGTGTGATTTTATTTGATTATTATAGAAACCCTAGTGTATATAAGGCTTACAATTATCATGTCCGACTGGGCTGATGACTTGAACATAACTTCTCAGTTGAAAGATATTAAGGCCCCTTTGATTTGAACAAAATGTTTTTCATCCC
>Glyma05g01090.1 sequence type=CDS gene model=Glyma05g01090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCTCCGCAACATTTATGCCTCCTTCATCCCCAAAATTGAACCTTTATTCCAAAATTCGTAGACCCTTTTACCCTCACTCTGTCAGACTCCTTAAGCCCGTAAAGATTTGGGCTTCAACTACTCTGGATTATTCCAACGTCTCTACCAACGACAAATCCTCCCCTTTGAAGACTAGCAATTGGCAATGGAAGTTCAAGGACAATTTTATAAACATTTATTACGAGGAGCACGTAAAGGAGAGTCCGGAGCCTCCCCAAAATATCTTGATGATGCCAACCATTTCTGATGTTAGCATGGTCGAGGAATGGAGACTAGTGGCTGGAGACATTGTTCAACGTAATGGCAACACCAATTGGCGGGCAACTATTGTTGATTGGCCTGGCCTGGTTATTCTGATCGGCCAAAGATGGATTACAACGCTGATGTCTTGGAAAAATTTCTGGTTGATTTCATCAATTCACCCAATGGACCCAATGAAACACCCAGAAAATGATTTGATAATTTTTGGAGGAGGACACGCTGCAACTATAGTAGCCCGTGCTGCAAAAAAGGGTCTGGTGAAGCCCAAAGCTATAGCTGCTGTTGCACCAACTTGGGCTGGTCCACTCCCTATTGTGTTTGGTCGAGACTCCAATATGGAAACAAGGTATGGTCTTCTAAGAGGCACGTTAAAGGCCCCTGCTGTTGGCTGGATGATGTATAACATGCTTGTGAGCAACGAGAACGCAATCCAGTCACAGTACAAATCCCATGTATATGCCAACCCTGACAATGTGACTCCAGGAATTGTGGAAAGCAGATATGCATTGACCAAAAGAAAGGGAGCACGTTACTTGCCTGCCGCGTTCCTGACTGGTCAATTAGATCCTGTTACATCTCGCGAGGAGTTCCTTGAGCTCTTCGCGGCTTTGGAGGGAAAGACACCTGTGCTGGTTGTATCAACCAAAGGATCTCCCAAGAGGTCTAAGGCTGAGATGGAAGCTCTCAAGGGAGCTAAAGGGGTTAGCAAGTTTGTGGAAGTGCCAGGTGCTCTTCTTCCCCAAGAGGAGTATCCTGCTTTGGTGGCAGAAGAGCTTTATCAGTTCTTGCAAGAATATTTTGGCACTGTTGCTTAG >Glyma05g01090.2 sequence type=CDS gene model=Glyma05g01090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCTCCGCAACATTTATGCCTCCTTCATCCCCAAAATTGAACCTTTATTCCAAAATTCGTAGACCCTTTTACCCTCACTCTGTCAGACTCCTTAAGCCCGTAAAGATTTGGGCTTCAACTACTCTGGATTATTCCAACGTCTCTACCAACGACAAATCCTCCCCTTTGAAGACTAGCAATTGGCAATGGAAGTTCAAGGACAATTTTATAAACATTTATTACGAGGAGCACGTAAAGGAGAGTCCGGAGCCTCCCCAAAATATCTTGATGATGCCAACCATTTCTGATGTTAGCATGGTCGAGGAATGGAGACTAGTGGCTGGAGACATTGTTCAACGTAATGGCAACACCAATTGGCGGGCAACTATTGTTGATTGGCCTGGCCTGGTTATTCTGATCGGCCAAAGATGGATTACAACGCTGATGTCTTGGAAAAATTTCTGGTTGATTTCATCAATTCACCCAATGGACCCAATGAAACACCCAGGAGGACACGCTGCAACTATAGTAGCCCGTGCTGCAAAAAAGGGTCTGGTGAAGCCCAAAGCTATAGCTGCTGTTGCACCAACTTGGGCTGGTCCACTCCCTATTGTGTTTGGTCGAGACTCCAATATGGAAACAAGGTATGGTCTTCTAAGAGGCACGTTAAAGGCCCCTGCTGTTGGCTGGATGATGTATAACATGCTTGTGAGCAACGAGAACGCAATCCAGTCACAGTACAAATCCCATGTATATGCCAACCCTGACAATGTGACTCCAGGAATTGTGGAAAGCAGATATGCATTGACCAAAAGAAAGGGAGCACGTTACTTGCCTGCCGCGTTCCTGACTGGTCAATTAGATCCTGTTACATCTCGCGAGGAGTTCCTTGAGCTCTTCGCGGCTTTGGAGGGAAAGACACCTGTGCTGGTTGTATCAACCAAAGGATCTCCCAAGAGGTCTAAGGCTGAGATGGAAGCTCTCAAGGGAGCTAAAGGGGTTAGCAAGTTTGTGGAAGTGCCAGGTGCTCTTCTTCCCCAAGAGGAGTATCCTGCTTTGGTGGCAGAAGAGCTTTATCAGTTCTTGCAAGAATATTTTGGCACTGTTGCTTAG
>Glyma05g01090.1 sequence type=predicted peptide gene model=Glyma05g01090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSATFMPPSSPKLNLYSKIRRPFYPHSVRLLKPVKIWASTTLDYSNVSTNDKSSPLKTSNWQWKFKDNFINIYYEEHVKESPEPPQNILMMPTISDVSMVEEWRLVAGDIVQRNGNTNWRATIVDWPGLVILIGQRWITTLMSWKNFWLISSIHPMDPMKHPENDLIIFGGGHAATIVARAAKKGLVKPKAIAAVAPTWAGPLPIVFGRDSNMETRYGLLRGTLKAPAVGWMMYNMLVSNENAIQSQYKSHVYANPDNVTPGIVESRYALTKRKGARYLPAAFLTGQLDPVTSREEFLELFAALEGKTPVLVVSTKGSPKRSKAEMEALKGAKGVSKFVEVPGALLPQEEYPALVAEELYQFLQEYFGTVA* >Glyma05g01090.2 sequence type=predicted peptide gene model=Glyma05g01090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSATFMPPSSPKLNLYSKIRRPFYPHSVRLLKPVKIWASTTLDYSNVSTNDKSSPLKTSNWQWKFKDNFINIYYEEHVKESPEPPQNILMMPTISDVSMVEEWRLVAGDIVQRNGNTNWRATIVDWPGLVILIGQRWITTLMSWKNFWLISSIHPMDPMKHPGGHAATIVARAAKKGLVKPKAIAAVAPTWAGPLPIVFGRDSNMETRYGLLRGTLKAPAVGWMMYNMLVSNENAIQSQYKSHVYANPDNVTPGIVESRYALTKRKGARYLPAAFLTGQLDPVTSREEFLELFAALEGKTPVLVVSTKGSPKRSKAEMEALKGAKGVSKFVEVPGALLPQEEYPALVAEELYQFLQEYFGTVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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