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Report for Sequence Feature Glyma05g01051

Feature Type:gene_model
Chromosome:Gm05
Start:625856
stop:628053
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g01051
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74680AT Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr1:28059528-28060984 FORWARD LENGTH=461 SoyBaseE_val: 6.00E-134ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG1021 KOG Acetylglucosaminyltransferase EXT1/exostosin 1 JGI ISS
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI ISS
PTHR11062:SF25Panther JGI ISS
PF03016PFAM Exostosin family JGI ISS
UniRef100_B9RLZ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RLZ1_RICCO SoyBaseE_val: 3.00E-157ISS
UniRef100_UPI000233EADDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EADD related cluster n=1 Tax=unknown RepID=UPI000233EADD SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g01051
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g01051 not represented in the dataset
Glyma05g01051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g01051
ParalogEvidenceComments
Glyma17g10840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g01051 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g026800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g01051
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g01051
>Glyma05g01051.1   sequence type=CDS   gene model=Glyma05g01051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCCTCAAGATTTATATTTTGTGTAATTGTTATTGCCATGTTCCTTTTGGTCCAGTCTTCCTTTTTCCTCATCCACTTGAGTAATCAGTCATCCATTCCAAGATCCGTGTTGGAGCTTTTTCTTGTCAACAACACATCACTTGACTTCAAACCTAGGTTTCACTTTGGGTTATTGGATTGGAAAGGGAATGTGAACCAAACATGGCTTAATGTGAATAACCCAAAACACATTCCACCTTATCCAGGTGGGCTTAATTTGCAGCATAGTGTGGAATACTGGCTCACCCTTGATCTTCTGTCATCAAACATTGCGAAAAAATTTTGGTCTTGCACCGCAATTAGAGTGCAGAATTCAAGCCACACGGATGTGGTTTTTGTGCCATTTTTCTCATCTTTGAGGCATTCCAAAATCCATGGGAAGGAAAAAGTTAGTGTTAACAAAATGTTGCAACAGAGATTGGTACAGTTCCTAATGGGGCGGGAAGAATGGAAACGTTATGGAGGGATGGATCATGTGATTGTGGAACACCATCCTAATAGCATTCTGCATGCAAGAAGAAAGTTGGGCTCTGCCATGCTTGTGCTTGCAGATTTTGGAAGATACCCTTCTCAATTAGCAAACATTAACAAGGATATAATTGCTCCGTATAGACATCTAGTAAGTACTGTACCAAGAGCTGGGTCAGCTTCATATGAGGAACGTTCTACACTTCTATATTTCCAGGGGACAATATCTGGGAAAGATGCGAGCATGGCCTTATCCAAATTTTGCCTTAACGTTGCTGGAGATACCCCATCCTCAAATCGCCTCTTTGATGCCATTGTGAGCCACTGTGTTCCTGTGATCATTAGTGACGAAATTGAGCTACGATTTGAAGATGTTTTGGACTACTCAGAATTTGGCTTGTTTGTCCATGCCTCAGATTCTGTAAGGAAAGGCTACCTGCTCAATCTTCTTCGTTCAATCAAACCAGAGAAATGGACCAAGATGTGGGCAAGGTTGAAGGATATTACACAGCACTTTGAGTATCAATATCCAAGCCAGCCTGGGGATGCAGTGAATATGATTTGGGAGGAAGTTGCACAGGAAAAACAGATACCAGAGACCTTAGCTTCTTGTTATGATCCACTGAAATACTAA
Predicted protein sequences of Glyma05g01051
>Glyma05g01051.1   sequence type=predicted peptide   gene model=Glyma05g01051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPSRFIFCVIVIAMFLLVQSSFFLIHLSNQSSIPRSVLELFLVNNTSLDFKPRFHFGLLDWKGNVNQTWLNVNNPKHIPPYPGGLNLQHSVEYWLTLDLLSSNIAKKFWSCTAIRVQNSSHTDVVFVPFFSSLRHSKIHGKEKVSVNKMLQQRLVQFLMGREEWKRYGGMDHVIVEHHPNSILHARRKLGSAMLVLADFGRYPSQLANINKDIIAPYRHLVSTVPRAGSASYEERSTLLYFQGTISGKDASMALSKFCLNVAGDTPSSNRLFDAIVSHCVPVIISDEIELRFEDVLDYSEFGLFVHASDSVRKGYLLNLLRSIKPEKWTKMWARLKDITQHFEYQYPSQPGDAVNMIWEEVAQEKQIPETLASCYDPLKY*






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