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Report for Sequence Feature Glyma05g00900

Feature Type:gene_model
Chromosome:Gm05
Start:520178
stop:523795
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g00900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74410AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:27965723-27967681 FORWARD LENGTH=223 SoyBaseE_val: 1.00E-72ISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF23Panther OS10G0544600 PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9RLW0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1Q, putative n=1 Tax=Ricinus communis RepID=B9RLW0_RICCO SoyBaseE_val: 2.00E-81ISS
UniRef100_I1JZM9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZM9_SOYBN SoyBaseE_val: 5.00E-162ISS

Expression Patterns of Glyma05g00900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g00900
ParalogEvidenceComments
Glyma17g11000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g00900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g025200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g00900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g00900
>Glyma05g00900.1   sequence type=CDS   gene model=Glyma05g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTGGAAGAATCCAGGGACCTTGGGGATTTCGCTCTTTATCCAAAGTCGTTTTGTGCACCATTTCTGGGGCCCTGACCGTGTGTTTTGCCATTGCTGGGGCCCTCACAGGAGCTATAGCTGGTGCTCTAGCAGCTAAGGCTACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGCTCTATACTCTCCGTGGAGGTGTTGGAAGCTTCCCGCGCCTATTGGTGTATGGAGCAAACCGGCTCACGGGGTGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAATCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAGCAGGTTGGCATTGCTAATACAGGCTATGATGAGATTCATGATGTTCATGGCTTAGTGGCACCCAGAGGATTGTCAGGAGATTCATTGAAGAGGTTACCGCACCATATGATCTCAAAGGATATGAAGGCAGATAATACTTGCTGTGCAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCACGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTGTTTGCAGACAGAATGTGCAACTTGTTCCTTGGGCAATTTGA
Predicted protein sequences of Glyma05g00900
>Glyma05g00900.1   sequence type=predicted peptide   gene model=Glyma05g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METGRIQGPWGFRSLSKVVLCTISGALTVCFAIAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANTGYDEIHDVHGLVAPRGLSGDSLKRLPHHMISKDMKADNTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNVQLVPWAI*






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