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Report for Sequence Feature Glyma05g00880

Feature Type:gene_model
Chromosome:Gm05
Start:502122
stop:507017
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g00880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61380AT Annotation by Michelle Graham. TAIR10: CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618 SoyBaseE_val: 0ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0010031GO-bp Annotation by Michelle Graham. GO Biological Process: circumnutation SoyBaseN/AISS
GO:0010629GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0048574GO-bp Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR26402Panther RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF06203PFAM CCT motif JGI ISS
UniRef100_C0SNP3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Timing of CAB expression 1 n=1 Tax=Glycine max RepID=C0SNP3_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0002339CB4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339CB4 related cluster n=1 Tax=unknown RepID=UPI0002339CB4 SoyBaseE_val: 0ISS

Proteins Associated with Glyma05g00880
LocusGene SymbolProtein Name
PRR38 Ubiquitous, Pseudo response regulator

Expression Patterns of Glyma05g00880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g00880
ParalogEvidenceComments
Glyma17g11040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g00880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g025000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g00880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g00880
>Glyma05g00880.2   sequence type=CDS   gene model=Glyma05g00880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCTGAAACTGAGACTGAGGAACTTATAAATTTGAACGATAAATCAAGTAACTTTGGTGGGAATAATAGTAAGAGTGGCGATGGATTCATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTGCTCTTCTTTTGGGATGCTCTTACCAGGTTACTTCAGTAAGGTCAGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAATAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTGTGTCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTTTCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTACTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTAGAGAACAACATCTTGACTTATGACTTTGATCTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACAGGAGTATCAATCCAACAGGAACAAGAGGCTAGTATTGCCACCATTGCTGCTGTGGTGGTGGAGCTTCCCAATGCTCTTCTATCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGTCGAACAGTTGCAGCTACTCCAAGGCAGCATCCATCAAGCAGCAGAACTAATGATGGACATTTTTTATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAACACTTAAGAGAAACGTTGAAGAGAGTGCTCATGTTGACAATACTACTACTACAGAAGTCAGGGTGGAAGATATGAATCAAGCATGTACTGAACAGGGGGGTAATGACCTTAAAACACATGAAAATGAAGAAATGTTTGAAAACCATTCACAAGATGACTTACCCAGCAGCAATAGTATCCCCGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCGACGGAAGTTTCACAGCAAAAGCATTACAAGGAAGAACATTCTCAGGGAGTGGTGCATCCAAGAAATGGTAGTCATGGTTCTGGGCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCACGTTATGATGCCATCATCAGCACAACTGTATCAAAAGAATATCCAGGACCTGCAGAGTCATGCTGGTTCTTCCATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCAAATGGGATGACATCCTTCCCATATTATCCGATGAGCATTTGCTTACAACCTGGTCAGATTTCTACTAATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGTGAAGTAAAAATAAGTAAAGTTGATAGGAGAGAAGCAGCATTGGTGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTCGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTATTAATGTGGATCTTAATGGGCAACCTGCTTCCACTGATTATGATGAAGATGATGAAGAAGAGGAAGACAATCATGGAGCAAGAGATTCCTCTCCTGAGGATGCTTGA
Predicted protein sequences of Glyma05g00880
>Glyma05g00880.2   sequence type=predicted peptide   gene model=Glyma05g00880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAETETEELINLNDKSSNFGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFALLLGCSYQVTSVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILTYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTNPETGVSIQQEQEASIATIAAVVVELPNALLSEYQPDVPGISDRRTVAATPRQHPSSSRTNDGHFLSGPKKSELKIGESSAFFTYVKATTLKRNVEESAHVDNTTTTEVRVEDMNQACTEQGGNDLKTHENEEMFENHSQDDLPSSNSIPDSFSIERSCTPPASTEVSQQKHYKEEHSQGVVHPRNGSHGSGPAQHAYPYYISGVVNHVMMPSSAQLYQKNIQDLQSHAGSSMIAQYNHLPQCPPHANGMTSFPYYPMSICLQPGQISTNSWPSLGSSSSCEVKISKVDRREAALVKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDEDDEEEEDNHGARDSSPEDA*






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