SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07740 | AT | Annotation by Michelle Graham. TAIR10: actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649 | SoyBase | E_val: 0 | ISS |
| GO:0016043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular component organization | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| KOG1922 | KOG | Rho GTPase effector BNI1 and related formins | JGI | ISS | |
| PTHR23213 | Panther | FORMIN-RELATED | JGI | ISS | |
| PTHR23213:SF18 | Panther | FORMIN-RELATED | JGI | ISS | |
| PF02181 | PFAM | Formin Homology 2 Domain | JGI | ISS | |
| PF10409 | PFAM | C2 domain of PTEN tumour-suppressor protein | JGI | ISS | |
| UniRef100_Q9FLQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formin-like protein 20 n=1 Tax=Arabidopsis thaliana RepID=FH20_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339CB3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339CB3 related cluster n=1 Tax=unknown RepID=UPI0002339CB3 | SoyBase | E_val: 0 | ISS |
|
Glyma05g00820 not represented in the dataset |
Glyma05g00820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g11100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g024500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g00820.3 sequence type=transcript gene model=Glyma05g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTCCATCTTATCTATATGGTTACATTTTGTAATGACTGGTTTTATGTTCTCTCTTAGTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTACTGATTCTGGCAAATCTGGAGGGCGGCGCAAGTCTGTTGGAGCTAAAACTGATAAAATCACCTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACCAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTAGCTTTGGATGAGTCGGTATTGGATGTTGATCAAGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAGATGGATCTTTTGAAGGGATACACTGGTGACAAGGAGCTTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGTTGATGAAGGTGCCAAGAGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTAATTCTCAGGTTATGGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGGAATTCTGTTAAACTGAAGGACATAATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTGGCTGATAAGTCGCCCGGGCTCCTTGATTTCCACCTAGACCTTGTAAGCCTGGAATCTTCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAATTTGCTGCATCTGCAAATGATGGACCTGTCTCTGAAGTTTTCCATAAGACATTGAAAGAATTTATAGCTGTATCTGAGTCAGAGGTAGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAGTGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGTTGCCCAATGGAGCAAGTTACCACAACCCTGCTAAATTTTATACGATTGTTTCGGAAAGCACATGAAGAGAATATCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCCAAGGGCATTAACTTGACAAAGAAGGGTGCAAAAGATAGTTGACAGCTGCGTTTTCTGCTCCTTTGCATCAACATCACGCTCTTGCCAAAGAGCAGGAATGTACCCGTGTAAGGGGAATGCTTCTGAGACCAGTTAAGAAGCCTCCCCTTCCATGATGATGATGACGATGACGACGATGATGTGGCAATTAGCCTTTCAAGCTGATATATTGGCGGGGAATAGCGAATTCCTGCGTCCTGTGGAGTTTTGAACATACAACAGGCTTAGGAGATAGGAGTTGATTCTTTGATGGCATGGTGCTGAATTGGATTTATGCGGCCAACTGATCTTTTTTATCAGAATACTCTGGAAATTCCCTGATTTAGATGCAGAATGGATGCTTACTGTGATTGCATGCGTCCAGTGTATGCTATGAAAATGACGGATCCAGTCCCTTTTATGTTGGTTCAAGAAGAAATTTTGTAGCAGGGCATGCCTTCTATTATGGCAGTAGAAGTGGCATTGGCTTGCATCATTCATTTGGCATATTTAATGTAGCACCACAGCAGATGCTTTTTGGATTTGTGAAACACCAAAGTCCAACCCCAACCGTAGTACCATGACACCTTGTATAAAGCACTAGCCCTCCTCCTTTAGGATTCAATTCTTTCTCATGTAACATAGAAATTAGTTTCCTTTTTGATAGAGATTTTGGTAGGTACCCTCGAGAAAATGTTGTATAGCAGTCAGGTTCGGAGAAAATAGAAATCAGGTCATTGTATTGTAACCAATATTAATTTCAATTGTGAATCACGAGGATAATTTTTGAATTGTGAATTATAAATCATATTGAATCAGAAAAATTGAGACAA
>Glyma05g00820.2 sequence type=CDS gene model=Glyma05g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATTTCCGAGAGAGTTTATGTTTTCGATTGCTGCTTCTCCAAGGATGTCTTGGAAGAAGATGAATACAGAGTGTATATGGGGGGGATTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTATTCAACTTCCGAGAAGGGGAGAGACGCAGCCAAATCTCAGACATATTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGCCCCCTTCTGCCTTTAGAGATGATCCATCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAGCAGAATGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCCGTGCTGGCATTTATGCTAGCAGGTCTTCTGTTATACCGGAAACAGTACAGTGGGGATCAGAAGACTCTTGAGATGGTCTACAAGCAAGCTCCAAGAGAACTACTACACTTTTTATCTCCTTTGGATCCACAGCCTTCTCATTTAAGATATCTTCAGTATATTTCCTGGAGACATTTGGGTTCTGAGTGGCCACCATCGGAAACACCCTTATATTTGGATTGTCTGATTCTTAGAGTCCTTCCATTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCAGGACCCTTCAATTCCTGCCAATAGAAGTTCAAAGCTACTTTTTTCATCTTCAATATCCATAAAGCATGTTCACCACTACCTACAGGCAGAGTGTATGCTCGTGAAAATTGACATCCGTTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAATGAAGATTTTGTTCATGAGGAGATGATGTTTAGAGTTATGTTTCATACTGCATTTGTGCGGTCAAATATTTTGATGCTGAACCGTGATGAAATTGATATTTTGTGGGAGGCAAAGGACCTATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGACTGAGAGTGCCGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTAGAAGAGATTTTCAGCAATGTAATTGATGCACAGGAAGGTAAGACAGAATTTGATTCACAAGTTTTTCATGAAAATGCAGTGGATGTTGAAACTCATAAAGAGGTCTGGAGGCAAGAGTCGGATCCTCATACTTTTGAGGATTGTACACCCGATGACAGGATTCCTAAGCAGGTTGACAAGATGGATTCTGGTATTAATGCAGTGAAAGATATCTCCATTGATGATGTGCACTATAAATTTGATGGGAGCATGGATTCAGATCCTCATGCAGTGAAGGACATTGCTGTGGATGATGGAGAAATTAAGTCAACTTCCACTACATTTATTTCTGATACGATGAAACCTCCTCTGGAAACAAAGGAAGTCAACATGGATGTGCACCAAGAATTAGCAGTTATGCAAAATGAATATGATGAAGATAAGGAGGCAACAGAAAAGGAATTAGACTCCAAGGCAGGCCACCAGATGCCTGATTTGTCTGAACAAAAATCTGGTAAACTACTTTCATCTACTGCCAAGAAACAACCTCCATCTAACTCGAAGCCAGTTGGAGATTCAATTGCAGCAAAGCCAAAGATTAAACAGCAAGATACCCATGGTTTTCAGGCAAAACAAGCTAAGCCAAATGTAGTAACTAGGTGGATTCCTTCTAACAAGGGTTCTTATACAAATTCAATGCATGTCTATTATCCACCATCAAGGAATAATAGTGCACCAGCTGCGCTGACAAATTTCTCCTCCTCAAAGGAGAAAATGGAAGATGCCAAAACAAGATCTTTATCTGCTCCTGTTGTCTCTGCAGTCGTTTCTCTTGACAAGACAAATGACCTGAAAAGTCGGAAGGTTGCCACTTCAAAATCTTCTGCCTATATAGCAGCAGAAATGGATGAAAAATGTCCACCATTATCATTGCTGCCAATTAAAGAGACATCTTTTCAGTCAGATACTCAAGCCCAAGAACAGAGCTCAGAGCAAGGGCTACAGCCTCCCCCACCACCTCCCCTTCCATCTCAAAGTAGAATCCCTTCACATGTTTTTGAATCCTTATCATTAAAGGATGATGTATCAGCTCAAGATTCTCCATCTCAACTGTTATCACCATCTTCTTTGGGTGGAAAGGGGTCCACCATGGTGCCACCACCACCTTCAAGTTTAACGTCATTTACGAGACAACCTGCAACTTTTCATCCTTCCCCTCCACCCCCACCCCAACCCCCACCCCCGCCCCCACCTCCACCCCCATTTTTTGGGCTAAATAAAGGGAGCTTAGTTCCTTCCCCATCCCCTCCTGATCATAGTCCTTTTGTAGTGGGTACTGCAGTGGCACTTTCACAGCCTCCTCCACCACCACCTCCAATGCCGCCTCCAAGTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTACTGATTCTGGCAAATCTGGAGGGCGGCGCAAGTCTGTTGGAGCTAAAACTGATAAAATCACCTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACCAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTAGCTTTGGATGAGTCGGTATTGGATGTTGATCAAGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAGATGGATCTTTTGAAGGGATACACTGGTGACAAGGAGCTTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGTTGATGAAGGTGCCAAGAGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTAATTCTCAGGTTATGGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGGAATTCTGTTAAACTGAAGGACATAATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTGGCTGATAAGTCGCCCGGGCTCCTTGATTTCCACCTAGACCTTGTAAGCCTGGAATCTTCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAATTTGCTGCATCTGCAAATGATGGACCTGTCTCTGAAGTTTTCCATAAGACATTGAAAGAATTTATAGCTGTATCTGAGTCAGAGGTAGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAGTGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGTTGCCCAATGGAGCAAGTTACCACAACCCTGCTAAATTTTATACGATTGTTTCGGAAAGCACATGAAGAGAATATCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCCAAGGGCATTAACTTGACAAAGAAGGGTGCAAAAGATAGTTGA >Glyma05g00820.3 sequence type=CDS gene model=Glyma05g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGGTTTTATGTTCTCTCTTAGTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTACTGATTCTGGCAAATCTGGAGGGCGGCGCAAGTCTGTTGGAGCTAAAACTGATAAAATCACCTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACCAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTAGCTTTGGATGAGTCGGTATTGGATGTTGATCAAGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAGATGGATCTTTTGAAGGGATACACTGGTGACAAGGAGCTTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGTTGATGAAGGTGCCAAGAGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTAATTCTCAGGTTATGGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGGAATTCTGTTAAACTGAAGGACATAATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTGGCTGATAAGTCGCCCGGGCTCCTTGATTTCCACCTAGACCTTGTAAGCCTGGAATCTTCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAATTTGCTGCATCTGCAAATGATGGACCTGTCTCTGAAGTTTTCCATAAGACATTGAAAGAATTTATAGCTGTATCTGAGTCAGAGGTAGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAGTGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGTTGCCCAATGGAGCAAGTTACCACAACCCTGCTAAATTTTATACGATTGTTTCGGAAAGCACATGAAGAGAATATCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCCAAGGGCATTAACTTGACAAAGAAGGGTGCAAAAGATAGTTGA
>Glyma05g00820.2 sequence type=predicted peptide gene model=Glyma05g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALFRRFFYRKPPDRLLEISERVYVFDCCFSKDVLEEDEYRVYMGGIVAQLQDHFPDASFMVFNFREGERRSQISDIFSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGDQKTLEMVYKQAPRELLHFLSPLDPQPSHLRYLQYISWRHLGSEWPPSETPLYLDCLILRVLPLFDDGKGCRPVVRVYGQDPSIPANRSSKLLFSSSISIKHVHHYLQAECMLVKIDIRCRVQGDVVLECIHLNEDFVHEEMMFRVMFHTAFVRSNILMLNRDEIDILWEAKDLFPKDFKAEVLFLDADAVIPDLTTVTVSEDANETESAETESASPEEFYEVEEIFSNVIDAQEGKTEFDSQVFHENAVDVETHKEVWRQESDPHTFEDCTPDDRIPKQVDKMDSGINAVKDISIDDVHYKFDGSMDSDPHAVKDIAVDDGEIKSTSTTFISDTMKPPLETKEVNMDVHQELAVMQNEYDEDKEATEKELDSKAGHQMPDLSEQKSGKLLSSTAKKQPPSNSKPVGDSIAAKPKIKQQDTHGFQAKQAKPNVVTRWIPSNKGSYTNSMHVYYPPSRNNSAPAALTNFSSSKEKMEDAKTRSLSAPVVSAVVSLDKTNDLKSRKVATSKSSAYIAAEMDEKCPPLSLLPIKETSFQSDTQAQEQSSEQGLQPPPPPPLPSQSRIPSHVFESLSLKDDVSAQDSPSQLLSPSSLGGKGSTMVPPPPSSLTSFTRQPATFHPSPPPPPQPPPPPPPPPPFFGLNKGSLVPSPSPPDHSPFVVGTAVALSQPPPPPPPMPPPSAPEFDVSELEKLFSANVPKPTDSGKSGGRRKSVGAKTDKITLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMDLLKGYTGDKELLGKCEQFFLELMKVPRVESKLRVFAFKIQFNSQVMEFKKSLNTVNSACEEVRNSVKLKDIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLADKSPGLLDFHLDLVSLESSTKIQLKSLAEEMQAIIKGLEKVKQEFAASANDGPVSEVFHKTLKEFIAVSESEVASLTNLYSVVGRSADALALYFGEDPARCPMEQVTTTLLNFIRLFRKAHEENIKQAELEKKKAEKEAEMEKAKGINLTKKGAKDS* >Glyma05g00820.3 sequence type=predicted peptide gene model=Glyma05g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGFMFSLSAPEFDVSELEKLFSANVPKPTDSGKSGGRRKSVGAKTDKITLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMDLLKGYTGDKELLGKCEQFFLELMKVPRVESKLRVFAFKIQFNSQVMEFKKSLNTVNSACEEVRNSVKLKDIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLADKSPGLLDFHLDLVSLESSTKIQLKSLAEEMQAIIKGLEKVKQEFAASANDGPVSEVFHKTLKEFIAVSESEVASLTNLYSVVGRSADALALYFGEDPARCPMEQVTTTLLNFIRLFRKAHEENIKQAELEKKKAEKEAEMEKAKGINLTKKGAKDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
