Glyma05g00620 - SoyBase

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Report for Sequence Feature Glyma05g00620

Feature Type:	gene_model
Chromosome:	Gm05
Start:	333388
stop:	334782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g00620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31330	AT	Annotation by Michelle Graham. TAIR10: photosystem I subunit F \| chr1:11215011-11215939 REVERSE LENGTH=221	SoyBase	E_val: 1.00E-114	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009538	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I reaction center	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02507	PFAM	Photosystem I reaction centre subunit III	JGI		ISS
UniRef100_Q9XQB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I reaction center subunit III n=1 Tax=Vigna radiata var. radiata RepID=Q9XQB4_VIGRR	SoyBase	E_val: 4.00E-132	ISS
UniRef100_UPI0001D1670D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D1670D related cluster n=1 Tax=unknown RepID=UPI0001D1670D	SoyBase	E_val: 3.00E-160	ISS

Expression Patterns of Glyma05g00620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g00620 not represented in the dataset	Glyma05g00620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g00620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g022900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g00620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g00620

Limit To All Plant Sequences

>Glyma05g00620.1   sequence type=CDS   gene model=Glyma05g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCACCATTCCCTCCAACCTCTCCAAGCCCGCCGCCCTCCGCCCCAAACTAAGCCCAAAGCTAAGGTCCGCCGCCACAACCACCATCGTCTGCAGCACCACCAACAACAACAACAACAACAACGTGTCCTCCGACCTGAAGGCGTTCTCCGCCGCGCTGGCCCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGGCGCCGACATCTCGGGGCTCACCCCATGCAAGGAGTCGAAGCAGTTCGCGAAGCGTGAGAAGCAGTCGATAAAGAAGCTGGAGTCGTCGCTGAAGCTCTACGAGGCGGGCAGCGCCCCCGCACTGGCCATTAAGGCGAGCGTGGAGAAGACGAAGAGGAGGTTCGACAACTACGCGAAGCAGGGGTTGCTGTGCGGCGGCGATGGGTTGCCGCACCTGATCGTGAGCGGAGACCAGAGGCACTGGGGTGAGTTCATCACACCCGGAATACTATTCCTGTACATCTCGGGATGGATCGGCTGGGTGGGTCGGAGCTACCTGATTGCGATCAGGGACGAGAAGAAACCCACCATGAAGGAGATCATCATCGATGTTCCTCTGGCTTCTCGCTTGCTCTTCAGGGGTTTCAGCTGGCCCGTTGCTGCCTACAGAGAACTCATCAACGGCGACCTCATTGCCAAGGATGTCTAG

Predicted protein sequences of Glyma05g00620

Limit To All Plant Sequences

>Glyma05g00620.1   sequence type=predicted peptide   gene model=Glyma05g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLTIPSNLSKPAALRPKLSPKLRSAATTTIVCSTTNNNNNNNVSSDLKAFSAALALSSILLSAPLPAGADISGLTPCKESKQFAKREKQSIKKLESSLKLYEAGSAPALAIKASVEKTKRRFDNYAKQGLLCGGDGLPHLIVSGDQRHWGEFITPGILFLYISGWIGWVGRSYLIAIRDEKKPTMKEIIIDVPLASRLLFRGFSWPVAAYRELINGDLIAKDV*

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