Glyma05g00570 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g00570

Feature Type:	gene_model
Chromosome:	Gm05
Start:	296059
stop:	303286
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g00570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07920	AT	Annotation by Michelle Graham. TAIR10: diacylglycerol kinase1 \| chr5:2525197-2528396 REVERSE LENGTH=728	SoyBase	E_val: 0	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG1169	KOG	Diacylglycerol kinase	JGI		ISS
PTHR11255	Panther	DIACYLGLYCEROL KINASE	JGI		ISS
PTHR11255:SF33	Panther		JGI		ISS
PF00130	PFAM	Phorbol esters/diacylglycerol binding domain (C1 domain)	JGI		ISS
PF00609	PFAM	Diacylglycerol kinase accessory domain	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_B9RLR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase, theta, putative n=1 Tax=Ricinus communis RepID=B9RLR5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JZK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZK2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g00570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g00570

Paralog	Evidence	Comments
Glyma17g08510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g00570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g022500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g00570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g00570

Limit To All Plant Sequences

>Glyma05g00570.2   sequence type=transcript   gene model=Glyma05g00570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAGTTTCGTGTCTGTTTCGTTTCTGAGAAATTGAGGTATTCTTTATGCTTGCCGTTCATACCGTTGCTGGGGTTTGGAAGTTTGAAGTTAGCAAAAAAAGATTAATAGAAGATGCTTTTGACAAAAAATAGGGATGATGAATGCCTTTCTTGTTCAATATGTTTTTTGAGAGAAGGAGGATGAGTGTTCATGTATTAACCAGCTTGTAATTGCCCATGTATGAATTTTGATTGAAGAATGATACATATGGGGTGTGATTTCTTTATGTTGTTTATACACATGAGGTTTAGTTAGGAGGCATTTATCGTAGACTCGTAGTTAACTTGGATCGTCACAACCAAGCAAATTATACAAGCAATACAGTTGTATCTTTTTGAATCATATAGTTGAGGAATGGATGATGAAAGAGATTTTGAGTTGTTATTTTACAGTTGGAATACCAAGAATCCGACTGATCAGCTTTTCATTATATCTTTTCTTGTTGCTGCTCTTGTTGGAATGTTGACCATAGCCTACACGGCCTTTCAATGGAGGAGAAACATCAATCTAAGTTGGATGAAAGCAATAGCTAGATCTAAGAAAAACCCAAAGGCAAGGCACAAAATTCCTGCGGCCCCTCATACATGGGATTTAGAATCTGCATCTCGTGCAAAGAATTTAAACTGCTGTGTATGCTTTAAGTCCGTGTCACCCTCTCAAACTCTAGGACCTATTGTAGCTTCTGAAGGTTTCATCCACCGTTGCTGTACTTGTGGTGCAGTAGCTCATCTGAGCTGTTCCTCTAGTGCACACAAGGACTGCAAGTGTGTTTCTATGATTGGATATGAGCATGTCACACACCAATGGACTGTTTGTTGGACAGATGTAGCTGACCAACCTGACGAAACTGCTCTCTGTAGTTACTGTGAAGAGCTATGTGGTGGGACGTTCCTCAGTGGTTCCCCTATATGGTCTTGTTTGTGGTGCCAACGTTTAGTACATGTTGATTGTCATAGTACAATGTCTAATGAAACAGGTGATATTTGCGATTTGGGCCAATTTAGAAGATTGATACTATCACCACTGTATGTGAAGGAATTGAACTGGAACTTGCCAGGTGGATTTTTGAGCTCAATTACTCATGGGGCAAATGAAATAGCATCATCAGTTCGGGCAAGTATTAGGAACCAGAGCAAAAAGTACAAGCATGGAAATGAACTATCTGTTGAATCTGGGAATAGTGAGAGCATTGGTGAAGTGTCCACAGAAAGCACTGGTGATTCTCATCAAATACAGAATGGTCATCATGAAGTGGGTGAAAAAAGTAGCTCGAATAAGGGGGTTCAACATCAAGATAATGAAGTAGATAATAAATTGGATAGGAAACCCAGTCTTAGACGGAATTCATCAATCAACCAGAAGGATGAATCCCACTCATTAGGAGTGAAGCAGAAATATGATTTGATTGATTTGCCTCTGGATGCAAGACCATTGTTAGTTTTTATAAACAAGAAGAGTGGTGCCCAGCGTGGAGACTCACTTAGAATGCGTCTGAATATCCTTTTAAATCCTGTTCAGGTGTTTGAATTGAGCTCAACACAGGGGCCAGAGATGGGACTTTATTTGTTTAGAAAGGTGTCTCACTTCAGAGTTCTTGTATGTGGGGGAGATGGTACTGTTGGTTGGGTTCTGAATGCAATAGACAAGCAAAATTTTGTTTCCCCTCCCCCAGTTGCTATTCTTCCTGCTGGTACAGGAAATGATCTCGCTAGAGTTCTCTCCTGGGGAGGTGGCTTGGGTCCAGTGGAGAGGCAAGGGGGTCTTACTACATTTTTGCATCACATAGAACATGCTGCTGTTACAGTTCTTGACCGTTGGAAGGTAACAATTAGTAATCCACAAGGAAAACAACAGCTGCTACCAACAAAGTTTATGAACAATTATCTTGGAATTGGTTGTGATGCAAAGGTTGCTTTGGACATTCATAATCTGCGTGAAGAGAATCCAGATAAGTTTTATAACCAGTTTATGAATAAAGTTCTATATGCAAGAGAAGGTGCTAAAAGTATTATGGATAGGACATTTGCAGATTTACCTTGGCAGATTCGAGTTGAGGTTGATGGAGTTGAAATTGAGGTCCCTGAGGATGCGGAAGGTGTGCTTGTTGCAAATATTGGAAGCTACATGGGAGGTGTAGATTTGTGGCAAAATGAGGATGAAAATTATGATAATTTTGATCAACAATCCATGCATGATAAGATACTTGAAGTTGTGAGCATATCTGGAACATGGCACCTCGGGAAACTTCAGGTCGGGCTTTCTCGAGCTCGAAGACTTGCACAAGGACAGTCAATTAAGATACAATTGTTTGCCATGTTTCCTGTTCAAATTGATGGAGAGCCTTGGTTTCAGCAACCCTGCACAATTAACATAACCCATCATGGCCAGGCTTTCATGTTGAAGAGGGTGGCTGAGGAACCCCTTGGCCCTGCATCTGCAATAATTGCTGAAGTGCTTGAGAATGCTGAAACACATAATGTAATTAATGCTTCACAAAAGCGAGCTCTTCTTCATGAAATGGCACTGAGGCTGTCCTAGAATTCTCTCCACCCTGCGAATGTGATTAAAGATTTTGTATTTCTTTTGAAATATATTTTGCACACTTTGTGTATTACTTTTCCTTTTTGAATCTTTTGTCCAAACTTCCTGCTACTTCTGAAGCAGGCTTGTGTATTACGAATCTTTACATGAAAAGAAAGAATGAAATCAGCAATATACAGTTATATGTACCAAATATCAAGCCCCAATGCAGCAAGTTGCTTACGTTTGGCATGTCCATTA

Coding sequences of Glyma05g00570

Limit To All Plant Sequences

>Glyma05g00570.1   sequence type=CDS   gene model=Glyma05g00570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGAAAGAGATTTTGAGTTGTTATTTTACAGTTGGAATACCAAGAATCCGACTGATCAGCTTTTCATTATATCTTTTCTTGTTGCTGCTCTTGTTGGAATGTTGACCATAGCCTACACGGCCTTTCAATGGAGGAGAAACATCAATCTAAGTTGGATGAAAGCAATAGCTAGATCTAAGAAAAACCCAAAGGCAAGGCACAAAATTCCTGCGGCCCCTCATACATGGGATTTAGAATCTGCATCTCGTGCAAAGAATTTAAACTGCTGTGTATGCTTTAAGTCCGTGTCACCCTCTCAAACTCTAGGACCTATTGTAGCTTCTGAAGGTTTCATCCACCGTTGCTGTACTTGTGGTGCAGTAGCTCATCTGAGCTGTTCCTCTAGTGCACACAAGGACTGCAAGTGTGTTTCTATGATTGGATATGAGCATGTCACACACCAATGGACTGTTTGTTGGACAGATGTAGCTGACCAACCTGACGAAACTGCTCTCTGTAGTTACTGTGAAGAGCTATGTGGTGGGACGTTCCTCAGTGGTTCCCCTATATGGTCTTGTTTGTGGTGCCAACGTTTAGTACATGTTGATTGTCATAGTACAATGTCTAATGAAACAGGTGATATTTGCGATTTGGGCCAATTTAGAAGATTGATACTATCACCACTGTATGTGAAGGAATTGAACTGGAACTTGCCAGGTGGATTTTTGAGCTCAATTACTCATGGGGCAAATGAAATAGCATCATCAGTTCGGGCAAGTATTAGGAACCAGAGCAAAAAGTACAAGCATGGAAATGAACTATCTGTTGAATCTGGGAATAGTGAGAGCATTGGTGAAGTGTCCACAGAAAGCACTGGTGATTCTCATCAAATACAGAATGGTCATCATGAAGTGGGTGAAAAAAGTAGCTCGAATAAGGGGGTTCAACATCAAGATAATGAAGTAGATAATAAATTGGATAGGAAACCCAGTCTTAGACGGAATTCATCAATCAACCAGAAGGATGAATCCCACTCATTAGGAGTGAAGCAGAAATATGATTTGATTGATTTGCCTCTGGATGCAAGACCATTGTTAGTTTTTATAAACAAGAAGAGTGGTGCCCAGCGTGGAGACTCACTTAGAATGCGTCTGAATATCCTTTTAAATCCTGTTCAGGTGTTTGAATTGAGCTCAACACAGGGGCCAGAGATGGGACTTTATTTGTTTAGAAAGGTGTCTCACTTCAGAGTTCTTGTATGTGGGGGAGATGGTACTGTTGGTTGGGTTCTGAATGCAATAGACAAGCAAAATTTTGTTTCCCCTCCCCCAGTTGCTATTCTTCCTGCTGGTACAGGAAATGATCTCGCTAGAGTTCTCTCCTGGGGAGGTGGCTTGGGTCCAGTGGAGAGGCAAGGGGGTCTTACTACATTTTTGCATCACATAGAACATGCTGCTGTTACAGTTCTTGACCGTTGGAAGGTAACAATTAGTAATCCACAAGGAAAACAACAGCTGCTACCAACAAAGTTTATGAACAATTATCTTGGAATTGGTTGTGATGCAAAGGTTGCTTTGGACATTCATAATCTGCGTGAAGAGAATCCAGATAAGTTTTATAACCAGTTTATGAATAAAGTTCTATATGCAAGAGAAGGTGCTAAAAGTATTATGGATAGGACATTTGCAGATTTACCTTGGCAGATTCGAGTTGAGGTTGATGGAGTTGAAATTGAGGTCCCTGAGGATGCGGAAGGTGTGCTTGTTGCAAATATTGGAAGCTACATGGGAGGTGTAGATTTGTGGCAAAATGAGGATGAAAATTATGATAATTTTGATCAACAATCCATGCATGATAAGATACTTGAAGTTGTGAGCATATCTGGAACATGGCACCTCGGGAAACTTCAGGTCGGGCTTTCTCGAGCTCGAAGACTTGCACAAGGACAGTCAATTAAGATACAATTGTTTGCCATGTTTCCTGTTCAAATTGATGGAGAGCCTTGGTTTCAGCAACCCTGCACAATTAACATAACCCATCATGGCCAGGCTTTCATGTTGAAGAGGGTGGCTGAGGAACCCCTTGGCCCTGCATCTGCAATAATTGCTGAAGTGCTTGAGAATGCTGAAACACATAATGTAATTAATGCTTCACAAAAGCGAGCTCTTCTTCATGAAATGGCACTGAGGCTGTCCTAG

>Glyma05g00570.2   sequence type=CDS   gene model=Glyma05g00570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGAAAGAGATTTTGAGTTGTTATTTTACAGTTGGAATACCAAGAATCCGACTGATCAGCTTTTCATTATATCTTTTCTTGTTGCTGCTCTTGTTGGAATGTTGACCATAGCCTACACGGCCTTTCAATGGAGGAGAAACATCAATCTAAGTTGGATGAAAGCAATAGCTAGATCTAAGAAAAACCCAAAGGCAAGGCACAAAATTCCTGCGGCCCCTCATACATGGGATTTAGAATCTGCATCTCGTGCAAAGAATTTAAACTGCTGTGTATGCTTTAAGTCCGTGTCACCCTCTCAAACTCTAGGACCTATTGTAGCTTCTGAAGGTTTCATCCACCGTTGCTGTACTTGTGGTGCAGTAGCTCATCTGAGCTGTTCCTCTAGTGCACACAAGGACTGCAAGTGTGTTTCTATGATTGGATATGAGCATGTCACACACCAATGGACTGTTTGTTGGACAGATGTAGCTGACCAACCTGACGAAACTGCTCTCTGTAGTTACTGTGAAGAGCTATGTGGTGGGACGTTCCTCAGTGGTTCCCCTATATGGTCTTGTTTGTGGTGCCAACGTTTAGTACATGTTGATTGTCATAGTACAATGTCTAATGAAACAGGTGATATTTGCGATTTGGGCCAATTTAGAAGATTGATACTATCACCACTGTATGTGAAGGAATTGAACTGGAACTTGCCAGGTGGATTTTTGAGCTCAATTACTCATGGGGCAAATGAAATAGCATCATCAGTTCGGGCAAGTATTAGGAACCAGAGCAAAAAGTACAAGCATGGAAATGAACTATCTGTTGAATCTGGGAATAGTGAGAGCATTGGTGAAGTGTCCACAGAAAGCACTGGTGATTCTCATCAAATACAGAATGGTCATCATGAAGTGGGTGAAAAAAGTAGCTCGAATAAGGGGGTTCAACATCAAGATAATGAAGTAGATAATAAATTGGATAGGAAACCCAGTCTTAGACGGAATTCATCAATCAACCAGAAGGATGAATCCCACTCATTAGGAGTGAAGCAGAAATATGATTTGATTGATTTGCCTCTGGATGCAAGACCATTGTTAGTTTTTATAAACAAGAAGAGTGGTGCCCAGCGTGGAGACTCACTTAGAATGCGTCTGAATATCCTTTTAAATCCTGTTCAGGTGTTTGAATTGAGCTCAACACAGGGGCCAGAGATGGGACTTTATTTGTTTAGAAAGGTGTCTCACTTCAGAGTTCTTGTATGTGGGGGAGATGGTACTGTTGGTTGGGTTCTGAATGCAATAGACAAGCAAAATTTTGTTTCCCCTCCCCCAGTTGCTATTCTTCCTGCTGGTACAGGAAATGATCTCGCTAGAGTTCTCTCCTGGGGAGGTGGCTTGGGTCCAGTGGAGAGGCAAGGGGGTCTTACTACATTTTTGCATCACATAGAACATGCTGCTGTTACAGTTCTTGACCGTTGGAAGGTAACAATTAGTAATCCACAAGGAAAACAACAGCTGCTACCAACAAAGTTTATGAACAATTATCTTGGAATTGGTTGTGATGCAAAGGTTGCTTTGGACATTCATAATCTGCGTGAAGAGAATCCAGATAAGTTTTATAACCAGTTTATGAATAAAGTTCTATATGCAAGAGAAGGTGCTAAAAGTATTATGGATAGGACATTTGCAGATTTACCTTGGCAGATTCGAGTTGAGGTTGATGGAGTTGAAATTGAGGTCCCTGAGGATGCGGAAGGTGTGCTTGTTGCAAATATTGGAAGCTACATGGGAGGTGTAGATTTGTGGCAAAATGAGGATGAAAATTATGATAATTTTGATCAACAATCCATGCATGATAAGATACTTGAAGTTGTGAGCATATCTGGAACATGGCACCTCGGGAAACTTCAGGTCGGGCTTTCTCGAGCTCGAAGACTTGCACAAGGACAGTCAATTAAGATACAATTGTTTGCCATGTTTCCTGTTCAAATTGATGGAGAGCCTTGGTTTCAGCAACCCTGCACAATTAACATAACCCATCATGGCCAGGCTTTCATGTTGAAGAGGGTGGCTGAGGAACCCCTTGGCCCTGCATCTGCAATAATTGCTGAAGTGCTTGAGAATGCTGAAACACATAATGTAATTAATGCTTCACAAAAGCGAGCTCTTCTTCATGAAATGGCACTGAGGCTGTCCTAG

Predicted protein sequences of Glyma05g00570

Limit To All Plant Sequences

>Glyma05g00570.1   sequence type=predicted peptide   gene model=Glyma05g00570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDERDFELLFYSWNTKNPTDQLFIISFLVAALVGMLTIAYTAFQWRRNINLSWMKAIARSKKNPKARHKIPAAPHTWDLESASRAKNLNCCVCFKSVSPSQTLGPIVASEGFIHRCCTCGAVAHLSCSSSAHKDCKCVSMIGYEHVTHQWTVCWTDVADQPDETALCSYCEELCGGTFLSGSPIWSCLWCQRLVHVDCHSTMSNETGDICDLGQFRRLILSPLYVKELNWNLPGGFLSSITHGANEIASSVRASIRNQSKKYKHGNELSVESGNSESIGEVSTESTGDSHQIQNGHHEVGEKSSSNKGVQHQDNEVDNKLDRKPSLRRNSSINQKDESHSLGVKQKYDLIDLPLDARPLLVFINKKSGAQRGDSLRMRLNILLNPVQVFELSSTQGPEMGLYLFRKVSHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLSWGGGLGPVERQGGLTTFLHHIEHAAVTVLDRWKVTISNPQGKQQLLPTKFMNNYLGIGCDAKVALDIHNLREENPDKFYNQFMNKVLYAREGAKSIMDRTFADLPWQIRVEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDQQSMHDKILEVVSISGTWHLGKLQVGLSRARRLAQGQSIKIQLFAMFPVQIDGEPWFQQPCTINITHHGQAFMLKRVAEEPLGPASAIIAEVLENAETHNVINASQKRALLHEMALRLS*

>Glyma05g00570.2   sequence type=predicted peptide   gene model=Glyma05g00570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDERDFELLFYSWNTKNPTDQLFIISFLVAALVGMLTIAYTAFQWRRNINLSWMKAIARSKKNPKARHKIPAAPHTWDLESASRAKNLNCCVCFKSVSPSQTLGPIVASEGFIHRCCTCGAVAHLSCSSSAHKDCKCVSMIGYEHVTHQWTVCWTDVADQPDETALCSYCEELCGGTFLSGSPIWSCLWCQRLVHVDCHSTMSNETGDICDLGQFRRLILSPLYVKELNWNLPGGFLSSITHGANEIASSVRASIRNQSKKYKHGNELSVESGNSESIGEVSTESTGDSHQIQNGHHEVGEKSSSNKGVQHQDNEVDNKLDRKPSLRRNSSINQKDESHSLGVKQKYDLIDLPLDARPLLVFINKKSGAQRGDSLRMRLNILLNPVQVFELSSTQGPEMGLYLFRKVSHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLSWGGGLGPVERQGGLTTFLHHIEHAAVTVLDRWKVTISNPQGKQQLLPTKFMNNYLGIGCDAKVALDIHNLREENPDKFYNQFMNKVLYAREGAKSIMDRTFADLPWQIRVEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDQQSMHDKILEVVSISGTWHLGKLQVGLSRARRLAQGQSIKIQLFAMFPVQIDGEPWFQQPCTINITHHGQAFMLKRVAEEPLGPASAIIAEVLENAETHNVINASQKRALLHEMALRLS*

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