SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74310 | AT | Annotation by Michelle Graham. TAIR10: heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0019538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein metabolic process | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0043335 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein unfolding | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG1051 | KOG | Chaperone HSP104 and related ATP-dependent Clp proteases | JGI | ISS | |
| PTHR11638 | Panther | ATP-DEPENDENT CLP PROTEASE | JGI | ISS | |
| PTHR11638:SF50 | Panther | HEAT SHOCK PROTEIN 101 | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF02861 | PFAM | Clp amino terminal domain | JGI | ISS | |
| PF07724 | PFAM | AAA domain (Cdc48 subfamily) | JGI | ISS | |
| PF10431 | PFAM | C-terminal, D2-small domain, of ClpB protein | JGI | ISS | |
| UniRef100_Q39889 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Heat shock protein n=1 Tax=Glycine max RepID=Q39889_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q39889 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Glycine max RepID=Q39889_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g00540 not represented in the dataset |
Glyma05g00540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g08540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g022200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g00540.1 sequence type=CDS gene model=Glyma05g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCCTGAGAAGTTTACTCACAAGACTAATGAAGCTCTTGCGTCGGCCCACGAGCTCGCGATGAGTTCAGGCCACGCGCAATTGACTCCCATCCACTTGGCCCACGCGCTGATTTCCGATCCCAACGGCATCTTCGTGCTAGCGATAAACAGCGCGGGCGGCGGCGAGGAATCGGCACGCGCCGTGGAGCGAGTGTTGAACCAGGCTCTGAAGAAGCTACCCTGCCAGTCCCCTCCGCCGGACGAGGTGCCGGCGAGCACCAACCTCGTGAGGGCCATCAGGAGAGCACAGGCGGCGCAAAAATCACGTGGCGACACGCATTTGGCCGTTGATCAGTTGATCCTCGGAATCCTCGAAGACTCCCAAATCGGAGACCTGTTGAAGGAAGCGGGGGTTGCGGTGGCGAGGGTAAAATCGGAAGTGGATAAGCTTCGTGGGAAGGAAGGGAAGAAGGTTGAGAGCGCTTCCGGGGATACGAATTTCCAAGCTTTGAAGACTTATGGGCGTGACCTTGTTGAACAAGCGGGGAAGCTTGACCCTGTTATTGGCCGTGACGAAGAGATTAGAAGGGTTGTGAGGATTCTATCACGGAGGACTAAGAACAACCCGGTTCTCATTGGAGAACCGGGTGTGGGAAAAACTGCGGTTGTGGAAGGGTTGGCACAGAGGATAGTAAGAGGGGATGTTCCAAGCAACCTTGCTGATGTGAGGCTTATTGCGTTGGATATGGGGGCGTTGGTCGCGGGTGCCAAGTATAGAGGCGAGTTTGAGGAGCGGTTAAAGGCTGTTTTGAAGGAAGTGGAGGAGGCTGAGGGGAAGGTGATACTCTTCATTGATGAGATTCATTTGGTCCTTGGTGCTGGTAGAACTGAAGGCTCCATGGATGCTGCTAATCTATTCAAACCTATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGTGCCACCACGCTTGAGGAGTACAGGAAGTATGTGGAGAAGGATGCTGCATTCGAGAGGAGGTTCCAACAGGTTTTTGTGGCGGAACCTAGTGTGGTTGATACCATTAGCATTCTTCGTGGCTTGAAAGAGAGATATGAAGGCCATCACGGTGTTAGAATTCAGGACCGTGCTTTGGTTATGGCAGCTCAATTGTCTAACCGGTATATAACTGGGCGTCATCTTCCTGACAAGGCAATTGATTTGGTTGACGAGGCTTGTGCAAATGTTAGGGTTCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGCTAGAAGTGGAACTTCATGCTCTGGAGAAAGAGAAAGACAAGGCTAGCAAAGCCCGTCTTGTTGAAGTGCGGAAAGAACTTGATGACTTGAGGGACAAGCTTCAGCCTTTGATGATGAAGTACCGAAAAGAGAAAGAGAGGGTTGATGAGATTCGAAGGCTCAAGAAGAAAAGAGAAGAGCTTCTTTTTGCTTTACAAGAGGCTGAGAGAAGATATGATCTGGCTAGAGCTGCAGACCTGCGATATGGAGCAATTCAAGAGGTGGAAACTGCAATACAACAACTTGAAGGGAGCACTGAAGAGAATCTGATGTTGACTGAAACTGTTGGACCGGAGCAAATAGCTGAGGTTGTGAGCCGCTGGACCGGTATACCAGTTACAAGGCTTGGCCAAAATGAAAAAGAAAGATTGATTGGACTTGGTGACAGATTGCACAGCAGAGTTGTAGGACAAGACCAAGCTGTTAATGCTGTTGCTGAGGCTGTGTTGAGATCTAGAGCTGGGCTAGGAAGACCTCAACAACCAACTGGTTCATTCCTATTCCTTGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCTGAGCAACTATTTGATAATGAAAACCAGTTGGTGAGAATTGATATGTCCGAATACATGGAGCAGCACTCGGTTTCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGACAACTAACTGAAGCCGTAAGGCGAAGACCTTACAGTGTGGTGCTTTTTGATGAAGTGGAAAAGGCACATACATCTGTGTTCAATACTCTTCTTCAAGTTTTGGACGATGGGAGGTTAACTGATGGACAAGGCCGTACTGTGGACTTTAGAAACACTGTAATTATCATGACCTCAAATCTTGGAGCAGAGCACCTCCTCAGTGGACTTTCAGGAAAATGTACCATGCAAGTTGCTCGGGATCGGGTAATGCAGGAGGTGAGAAGGCAATTTAGGCCAGAATTGCTGAATCGACTTGATGAAATTGTGGTATTTGACCCCCTTTCACATGACCAATTGAGGAAGGTTGCAAGGCTACAAATGAAGGATGTAGCTAGTCGTCTTGCTGAGAAAGGAATTGCCTTGGCAGTCACTGATGCAGCACTAGACTATATACTTGCCGAGAGCTATGATCCGGTGTATGGTGCTAGACCAATAAGGAGGTGGCTTGAGAAGAAGGTGGTGACAGAGTTGTCTAGAATGCTTGTAAGAGAGGAGATTGATGAGAATTCAACGGTTTACATAGATGCTGGACCCAATGGGGGCGAGTTGGTCTACCGTGTAGAAAAGAATGGAGGGGTTGTTAATCCTACAACTGGGCAGAAGTCCGATATCTTGATTCAGATACCTAATGGACATGCACCTAAAACTGATGCTGTTCAAGCAGTCAAGAAGATGAAGATTGAGGAAATTGATGATGATGAAATGGAAGAGTGA
>Glyma05g00540.1 sequence type=predicted peptide gene model=Glyma05g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPEKFTHKTNEALASAHELAMSSGHAQLTPIHLAHALISDPNGIFVLAINSAGGGEESARAVERVLNQALKKLPCQSPPPDEVPASTNLVRAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLLKEAGVAVARVKSEVDKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVVDTISILRGLKERYEGHHGVRIQDRALVMAAQLSNRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERVDEIRRLKKKREELLFALQEAERRYDLARAADLRYGAIQEVETAIQQLEGSTEENLMLTETVGPEQIAEVVSRWTGIPVTRLGQNEKERLIGLGDRLHSRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQVARDRVMQEVRRQFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAEKGIALAVTDAALDYILAESYDPVYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAGPNGGELVYRVEKNGGVVNPTTGQKSDILIQIPNGHAPKTDAVQAVKKMKIEEIDDDEMEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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