Report for Sequence Feature Glyma05g00540
Feature Type: gene_model
Chromosome: Gm05
Start: 265406
stop: 269475
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g00540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G74310 AT
Annotation by Michelle Graham. TAIR10: heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911
SoyBase E_val: 0 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009644 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to high light intensity
SoyBase N/A ISS
GO:0010286 GO-bp
Annotation by Michelle Graham. GO Biological Process: heat acclimation
SoyBase N/A ISS
GO:0019538 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein metabolic process
SoyBase N/A ISS
GO:0034976 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress
SoyBase N/A ISS
GO:0042542 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide
SoyBase N/A ISS
GO:0043335 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein unfolding
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG1051
KOG
Chaperone HSP104 and related ATP-dependent Clp proteases
JGI ISS
PTHR11638 Panther
ATP-DEPENDENT CLP PROTEASE
JGI ISS
PTHR11638:SF50 Panther
HEAT SHOCK PROTEIN 101
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
PF02861 PFAM
Clp amino terminal domain
JGI ISS
PF07724 PFAM
AAA domain (Cdc48 subfamily)
JGI ISS
PF10431 PFAM
C-terminal, D2-small domain, of ClpB protein
JGI ISS
UniRef100_Q39889 UniRef
Annotation by Michelle Graham. Best UniRef hit: Heat shock protein n=1 Tax=Glycine max RepID=Q39889_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q39889 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Glycine max RepID=Q39889_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g00540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g00540
Paralog Evidence Comments
Glyma17g08540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g00540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g022200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g00540
Coding sequences of Glyma05g00540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g00540.1 sequence type=CDS gene model=Glyma05g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCCTGAGAAGTTTACTCACAAGACTAATGAAGCTCTTGCGTCGGCCCACGAGCTCGCGATGAGTTCAGGCCACGCGCAATTGACTCCCATCCACTTGGCCCACGCGCTGATTTCCGATCCCAACGGCATCTTCGTGCTAGCGATAAACAGCGCGGGCGGCGGCGAGGAATCGGCACGCGCCGTGGAGCGAGTGTTGAACCAGGCTCTGAAGAAGCTACCCTGCCAGTCCCCTCCGCCGGACGAGGTGCCGGCGAGCACCAACCTCGTGAGGGCCATCAGGAGAGCACAGGCGGCGCAAAAATCACGTGGCGACACGCATTTGGCCGTTGATCAGTTGATCCTCGGAATCCTCGAAGACTCCCAAATCGGAGACCTGTTGAAGGAAGCGGGGGTTGCGGTGGCGAGGGTAAAATCGGAAGTGGATAAGCTTCGTGGGAAGGAAGGGAAGAAGGTTGAGAGCGCTTCCGGGGATACGAATTTCCAAGCTTTGAAGACTTATGGGCGTGACCTTGTTGAACAAGCGGGGAAGCTTGACCCTGTTATTGGCCGTGACGAAGAGATTAGAAGGGTTGTGAGGATTCTATCACGGAGGACTAAGAACAACCCGGTTCTCATTGGAGAACCGGGTGTGGGAAAAACTGCGGTTGTGGAAGGGTTGGCACAGAGGATAGTAAGAGGGGATGTTCCAAGCAACCTTGCTGATGTGAGGCTTATTGCGTTGGATATGGGGGCGTTGGTCGCGGGTGCCAAGTATAGAGGCGAGTTTGAGGAGCGGTTAAAGGCTGTTTTGAAGGAAGTGGAGGAGGCTGAGGGGAAGGTGATACTCTTCATTGATGAGATTCATTTGGTCCTTGGTGCTGGTAGAACTGAAGGCTCCATGGATGCTGCTAATCTATTCAAACCTATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGTGCCACCACGCTTGAGGAGTACAGGAAGTATGTGGAGAAGGATGCTGCATTCGAGAGGAGGTTCCAACAGGTTTTTGTGGCGGAACCTAGTGTGGTTGATACCATTAGCATTCTTCGTGGCTTGAAAGAGAGATATGAAGGCCATCACGGTGTTAGAATTCAGGACCGTGCTTTGGTTATGGCAGCTCAATTGTCTAACCGGTATATAACTGGGCGTCATCTTCCTGACAAGGCAATTGATTTGGTTGACGAGGCTTGTGCAAATGTTAGGGTTCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGCTAGAAGTGGAACTTCATGCTCTGGAGAAAGAGAAAGACAAGGCTAGCAAAGCCCGTCTTGTTGAAGTGCGGAAAGAACTTGATGACTTGAGGGACAAGCTTCAGCCTTTGATGATGAAGTACCGAAAAGAGAAAGAGAGGGTTGATGAGATTCGAAGGCTCAAGAAGAAAAGAGAAGAGCTTCTTTTTGCTTTACAAGAGGCTGAGAGAAGATATGATCTGGCTAGAGCTGCAGACCTGCGATATGGAGCAATTCAAGAGGTGGAAACTGCAATACAACAACTTGAAGGGAGCACTGAAGAGAATCTGATGTTGACTGAAACTGTTGGACCGGAGCAAATAGCTGAGGTTGTGAGCCGCTGGACCGGTATACCAGTTACAAGGCTTGGCCAAAATGAAAAAGAAAGATTGATTGGACTTGGTGACAGATTGCACAGCAGAGTTGTAGGACAAGACCAAGCTGTTAATGCTGTTGCTGAGGCTGTGTTGAGATCTAGAGCTGGGCTAGGAAGACCTCAACAACCAACTGGTTCATTCCTATTCCTTGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCTGAGCAACTATTTGATAATGAAAACCAGTTGGTGAGAATTGATATGTCCGAATACATGGAGCAGCACTCGGTTTCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGACAACTAACTGAAGCCGTAAGGCGAAGACCTTACAGTGTGGTGCTTTTTGATGAAGTGGAAAAGGCACATACATCTGTGTTCAATACTCTTCTTCAAGTTTTGGACGATGGGAGGTTAACTGATGGACAAGGCCGTACTGTGGACTTTAGAAACACTGTAATTATCATGACCTCAAATCTTGGAGCAGAGCACCTCCTCAGTGGACTTTCAGGAAAATGTACCATGCAAGTTGCTCGGGATCGGGTAATGCAGGAGGTGAGAAGGCAATTTAGGCCAGAATTGCTGAATCGACTTGATGAAATTGTGGTATTTGACCCCCTTTCACATGACCAATTGAGGAAGGTTGCAAGGCTACAAATGAAGGATGTAGCTAGTCGTCTTGCTGAGAAAGGAATTGCCTTGGCAGTCACTGATGCAGCACTAGACTATATACTTGCCGAGAGCTATGATCCGGTGTATGGTGCTAGACCAATAAGGAGGTGGCTTGAGAAGAAGGTGGTGACAGAGTTGTCTAGAATGCTTGTAAGAGAGGAGATTGATGAGAATTCAACGGTTTACATAGATGCTGGACCCAATGGGGGCGAGTTGGTCTACCGTGTAGAAAAGAATGGAGGGGTTGTTAATCCTACAACTGGGCAGAAGTCCGATATCTTGATTCAGATACCTAATGGACATGCACCTAAAACTGATGCTGTTCAAGCAGTCAAGAAGATGAAGATTGAGGAAATTGATGATGATGAAATGGAAGAGTGA
Predicted protein sequences of Glyma05g00540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g00540.1 sequence type=predicted peptide gene model=Glyma05g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPEKFTHKTNEALASAHELAMSSGHAQLTPIHLAHALISDPNGIFVLAINSAGGGEESARAVERVLNQALKKLPCQSPPPDEVPASTNLVRAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLLKEAGVAVARVKSEVDKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVVDTISILRGLKERYEGHHGVRIQDRALVMAAQLSNRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERVDEIRRLKKKREELLFALQEAERRYDLARAADLRYGAIQEVETAIQQLEGSTEENLMLTETVGPEQIAEVVSRWTGIPVTRLGQNEKERLIGLGDRLHSRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQVARDRVMQEVRRQFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAEKGIALAVTDAALDYILAESYDPVYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAGPNGGELVYRVEKNGGVVNPTTGQKSDILIQIPNGHAPKTDAVQAVKKMKIEEIDDDEMEE*