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Report for Sequence Feature Glyma05g00540

Feature Type:gene_model
Chromosome:Gm05
Start:265406
stop:269475
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74310AT Annotation by Michelle Graham. TAIR10: heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0019538GO-bp Annotation by Michelle Graham. GO Biological Process: protein metabolic process SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0043335GO-bp Annotation by Michelle Graham. GO Biological Process: protein unfolding SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG1051 KOG Chaperone HSP104 and related ATP-dependent Clp proteases JGI ISS
PTHR11638Panther ATP-DEPENDENT CLP PROTEASE JGI ISS
PTHR11638:SF50Panther HEAT SHOCK PROTEIN 101 JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
PF02861PFAM Clp amino terminal domain JGI ISS
PF07724PFAM AAA domain (Cdc48 subfamily) JGI ISS
PF10431PFAM C-terminal, D2-small domain, of ClpB protein JGI ISS
UniRef100_Q39889UniRef Annotation by Michelle Graham. Best UniRef hit: Heat shock protein n=1 Tax=Glycine max RepID=Q39889_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q39889UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Glycine max RepID=Q39889_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g08540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g022200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g00540.1   sequence type=CDS   gene model=Glyma05g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCTGAGAAGTTTACTCACAAGACTAATGAAGCTCTTGCGTCGGCCCACGAGCTCGCGATGAGTTCAGGCCACGCGCAATTGACTCCCATCCACTTGGCCCACGCGCTGATTTCCGATCCCAACGGCATCTTCGTGCTAGCGATAAACAGCGCGGGCGGCGGCGAGGAATCGGCACGCGCCGTGGAGCGAGTGTTGAACCAGGCTCTGAAGAAGCTACCCTGCCAGTCCCCTCCGCCGGACGAGGTGCCGGCGAGCACCAACCTCGTGAGGGCCATCAGGAGAGCACAGGCGGCGCAAAAATCACGTGGCGACACGCATTTGGCCGTTGATCAGTTGATCCTCGGAATCCTCGAAGACTCCCAAATCGGAGACCTGTTGAAGGAAGCGGGGGTTGCGGTGGCGAGGGTAAAATCGGAAGTGGATAAGCTTCGTGGGAAGGAAGGGAAGAAGGTTGAGAGCGCTTCCGGGGATACGAATTTCCAAGCTTTGAAGACTTATGGGCGTGACCTTGTTGAACAAGCGGGGAAGCTTGACCCTGTTATTGGCCGTGACGAAGAGATTAGAAGGGTTGTGAGGATTCTATCACGGAGGACTAAGAACAACCCGGTTCTCATTGGAGAACCGGGTGTGGGAAAAACTGCGGTTGTGGAAGGGTTGGCACAGAGGATAGTAAGAGGGGATGTTCCAAGCAACCTTGCTGATGTGAGGCTTATTGCGTTGGATATGGGGGCGTTGGTCGCGGGTGCCAAGTATAGAGGCGAGTTTGAGGAGCGGTTAAAGGCTGTTTTGAAGGAAGTGGAGGAGGCTGAGGGGAAGGTGATACTCTTCATTGATGAGATTCATTTGGTCCTTGGTGCTGGTAGAACTGAAGGCTCCATGGATGCTGCTAATCTATTCAAACCTATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGTGCCACCACGCTTGAGGAGTACAGGAAGTATGTGGAGAAGGATGCTGCATTCGAGAGGAGGTTCCAACAGGTTTTTGTGGCGGAACCTAGTGTGGTTGATACCATTAGCATTCTTCGTGGCTTGAAAGAGAGATATGAAGGCCATCACGGTGTTAGAATTCAGGACCGTGCTTTGGTTATGGCAGCTCAATTGTCTAACCGGTATATAACTGGGCGTCATCTTCCTGACAAGGCAATTGATTTGGTTGACGAGGCTTGTGCAAATGTTAGGGTTCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGCTAGAAGTGGAACTTCATGCTCTGGAGAAAGAGAAAGACAAGGCTAGCAAAGCCCGTCTTGTTGAAGTGCGGAAAGAACTTGATGACTTGAGGGACAAGCTTCAGCCTTTGATGATGAAGTACCGAAAAGAGAAAGAGAGGGTTGATGAGATTCGAAGGCTCAAGAAGAAAAGAGAAGAGCTTCTTTTTGCTTTACAAGAGGCTGAGAGAAGATATGATCTGGCTAGAGCTGCAGACCTGCGATATGGAGCAATTCAAGAGGTGGAAACTGCAATACAACAACTTGAAGGGAGCACTGAAGAGAATCTGATGTTGACTGAAACTGTTGGACCGGAGCAAATAGCTGAGGTTGTGAGCCGCTGGACCGGTATACCAGTTACAAGGCTTGGCCAAAATGAAAAAGAAAGATTGATTGGACTTGGTGACAGATTGCACAGCAGAGTTGTAGGACAAGACCAAGCTGTTAATGCTGTTGCTGAGGCTGTGTTGAGATCTAGAGCTGGGCTAGGAAGACCTCAACAACCAACTGGTTCATTCCTATTCCTTGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCTGAGCAACTATTTGATAATGAAAACCAGTTGGTGAGAATTGATATGTCCGAATACATGGAGCAGCACTCGGTTTCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGACAACTAACTGAAGCCGTAAGGCGAAGACCTTACAGTGTGGTGCTTTTTGATGAAGTGGAAAAGGCACATACATCTGTGTTCAATACTCTTCTTCAAGTTTTGGACGATGGGAGGTTAACTGATGGACAAGGCCGTACTGTGGACTTTAGAAACACTGTAATTATCATGACCTCAAATCTTGGAGCAGAGCACCTCCTCAGTGGACTTTCAGGAAAATGTACCATGCAAGTTGCTCGGGATCGGGTAATGCAGGAGGTGAGAAGGCAATTTAGGCCAGAATTGCTGAATCGACTTGATGAAATTGTGGTATTTGACCCCCTTTCACATGACCAATTGAGGAAGGTTGCAAGGCTACAAATGAAGGATGTAGCTAGTCGTCTTGCTGAGAAAGGAATTGCCTTGGCAGTCACTGATGCAGCACTAGACTATATACTTGCCGAGAGCTATGATCCGGTGTATGGTGCTAGACCAATAAGGAGGTGGCTTGAGAAGAAGGTGGTGACAGAGTTGTCTAGAATGCTTGTAAGAGAGGAGATTGATGAGAATTCAACGGTTTACATAGATGCTGGACCCAATGGGGGCGAGTTGGTCTACCGTGTAGAAAAGAATGGAGGGGTTGTTAATCCTACAACTGGGCAGAAGTCCGATATCTTGATTCAGATACCTAATGGACATGCACCTAAAACTGATGCTGTTCAAGCAGTCAAGAAGATGAAGATTGAGGAAATTGATGATGATGAAATGGAAGAGTGA

>Glyma05g00540.1   sequence type=predicted peptide   gene model=Glyma05g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPEKFTHKTNEALASAHELAMSSGHAQLTPIHLAHALISDPNGIFVLAINSAGGGEESARAVERVLNQALKKLPCQSPPPDEVPASTNLVRAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLLKEAGVAVARVKSEVDKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVVDTISILRGLKERYEGHHGVRIQDRALVMAAQLSNRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERVDEIRRLKKKREELLFALQEAERRYDLARAADLRYGAIQEVETAIQQLEGSTEENLMLTETVGPEQIAEVVSRWTGIPVTRLGQNEKERLIGLGDRLHSRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQVARDRVMQEVRRQFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAEKGIALAVTDAALDYILAESYDPVYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAGPNGGELVYRVEKNGGVVNPTTGQKSDILIQIPNGHAPKTDAVQAVKKMKIEEIDDDEMEE*







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