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Report for Sequence Feature Glyma05g00500

Feature Type:gene_model
Chromosome:Gm05
Start:236222
stop:239973
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g00500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07990AT Annotation by Michelle Graham. TAIR10: Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513 SoyBaseE_val: 0ISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0016711GO-mf Annotation by Michelle Graham. GO Molecular Function: flavonoid 3'-monooxygenase activity SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF44Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_G7IWE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Flavonoid 3'-hydroxylase n=1 Tax=Medicago truncatula RepID=G7IWE5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JZJ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JZJ7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g00500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g00500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g021800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g00500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g00500
>Glyma05g00500.1   sequence type=CDS   gene model=Glyma05g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACTTGGGTTATAGGCTTTGCTACTATTATAGCAGCGGTCCTTATTTACCGGGTTCTGAAGCCCATAAGCAGGCCTTCTTCTTCATTACCTCTTCCACCAGGGCCCAGGCCATGGCCCATTGTCGGAAACTTGCCTCACATGGGCCCTGCGCCACACCAAGGCCTGGCAAACTTGGCTCAGACTCATGGACCGCTCATGCACCTCCGGTTGGGCTTTGTCGACGTGGTGGTGGCGGCTTCCGCCTCCGTGGCGGAGCAGTTCTTGAAGATCCACGACGCCAATTTCTGTAGCCGGCCACTGAACTTCAGGACCACATACTTGGCCTATAACAAACAAGACCTTGTTTTTGCTCCCTACGGCCCAAAGTGGCGGTTCCTGCGGAAACTAACTACCGTTCACATGTTCTCTGCCAAGGCCATGGATGATTTTAGCCAACTGCGACAGGAAGAGGTAGCAAGATTGACATGTAAATTAGCAAGATCAAGTTCTAAAGCAGTGAACTTAAGACAATTGTTGAATGTATGCACCACCAATGCATTGACAAGGATAATGATAGGACGACGAATTTTCAATGACGATAGCAGTGGTTGTGATCCTAAGGCGGATGAATTTAAATCTATGGTGGGGGAGCTTATGACATTGTTTGGAGTTTTCAATATCGGAGACTTTATTCCTGCTTTAGACTGGTTAGACCTTCAAGGAGTGAAAGCCAAGACAAAGAAACTACACAAAAAGGTTGATGCATTTTTAACTACCATTCTTGAGGAACACAAGAGTTTTGAGAATGACAAGCACCAAGGCTTGTTGAGTGCATTGTTGTCACTTACAAAGGATCCTCAAGAAGGACATACAATTGTTGAACCAGAAATCAAAGCAATACTTGCAAACATGCTTGTAGCTGGGACAGACACATCATCAAGCACAATAGAGTGGGCAATTGCAGAACTTATCAAGAATTCAAGAATTATGGTTCAAGTCCAACAAGAGTTGAATGTTGTTGTAGGACAGGATAGGCTTGTGACTGAACTAGATTTGCCCCACCTCCCTTACTTGCAAGCTGTGGTGAAGGAAACTTTACGTCTCCACCCACCAACCCCTCTTTCCCTCCCACGGTTTGCTGAAAATAGTTGTGAGATATTCAATTATCACATCCCCAAAGGTGCAACTCTCTTGGTTAATGTATGGGCCATAGGACGCGATCCTAAGGAATGGATTGACCCATTGGAGTTCAAACCTGAAAGGTTCTTGCCTGGTAATGAGAAGGTTGATGTTGACGTCAAAGGCAATAACTTTGAGCTTATACCTTTTGGTGCTGGGCGTAGAATATGTGTTGGTATGAGCTTAGGCCTAAAGATAGTTCAACTGCTCATTGCTACGTTGGCTCACTCATTTGATTGGGAGTTGGAGAACGGGACTGACCCAAAAAGACTCAACATGGATGAAACATATGGGATTACCCTCCAAAAGGCAATGCCTCTTTCTGTTCACCCTCATCCTAGGCTTTCACAACATGTGTATTCATCATCATCTTTGTGA
Predicted protein sequences of Glyma05g00500
>Glyma05g00500.1   sequence type=predicted peptide   gene model=Glyma05g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTWVIGFATIIAAVLIYRVLKPISRPSSSLPLPPGPRPWPIVGNLPHMGPAPHQGLANLAQTHGPLMHLRLGFVDVVVAASASVAEQFLKIHDANFCSRPLNFRTTYLAYNKQDLVFAPYGPKWRFLRKLTTVHMFSAKAMDDFSQLRQEEVARLTCKLARSSSKAVNLRQLLNVCTTNALTRIMIGRRIFNDDSSGCDPKADEFKSMVGELMTLFGVFNIGDFIPALDWLDLQGVKAKTKKLHKKVDAFLTTILEEHKSFENDKHQGLLSALLSLTKDPQEGHTIVEPEIKAILANMLVAGTDTSSSTIEWAIAELIKNSRIMVQVQQELNVVVGQDRLVTELDLPHLPYLQAVVKETLRLHPPTPLSLPRFAENSCEIFNYHIPKGATLLVNVWAIGRDPKEWIDPLEFKPERFLPGNEKVDVDVKGNNFELIPFGAGRRICVGMSLGLKIVQLLIATLAHSFDWELENGTDPKRLNMDETYGITLQKAMPLSVHPHPRLSQHVYSSSSL*






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