Glyma05g00470 - SoyBase

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Report for Sequence Feature Glyma05g00470

Feature Type:	gene_model
Chromosome:	Gm05
Start:	224231
stop:	229082
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g00470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18650	AT	Annotation by Michelle Graham. TAIR10: plasmodesmata callose-binding protein 3 \| chr1:6419036-6420413 REVERSE LENGTH=184	SoyBase	E_val: 4.00E-50	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0001872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (1->3)-beta-D-glucan binding	SoyBase	N/A	ISS
GO:0030247	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polysaccharide binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PTHR16631:SF1	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_B9RLP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9RLP4_RICCO	SoyBase	E_val: 2.00E-61	ISS
UniRef100_C6T016	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T016_SOYBN	SoyBase	E_val: 2.00E-142	ISS

Expression Patterns of Glyma05g00470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g00470

Paralog	Evidence	Comments
Glyma17g08570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g00470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g021500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g00470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g00470

Limit To All Plant Sequences

>Glyma05g00470.2   sequence type=transcript   gene model=Glyma05g00470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAATTGCAAAAGTAGAAAAGCATTCACAAGCCGACACGAAAGGGGGCCAAGTATCATCCCACCGTTAACACATTACACAACTTTACCATCTCCATCTCCTCTGTGTTATATTTTGTCCTCTTTTATTCTCATCTGATCACACACACTCTGTCACGCACCCACCATTCTACTACACTCCTCTCTCTCACTCTCACTCTCTGCTCCGTGATAGCTGTACCACGTTTTTCTCTCCATCTCGAAACACCATCTCTGCCTCAGTCCCAACCCATCACCATTCTCATGGCTGCTCTAGCTCTAGCACTTCTTCTTCTGGCTTTCACCGGCACTTCAAGTGCTACATGGTGCGTTTGCAAGGATGGAAGCGACGCGATCCTGCAGAAGACGTTAGACTATGCTTGTGGAGCTGGTGCTGACTGTAACCCTCTTCACCTAAACGGGCCTTGTTTTCAGCCCAACACCGTCAGGGCCCACTGTAACTACGCCGTGAACAGCTACTTCCAAAAGAAGGGTCAAGCTCAAGGGTCATGCGAGTTTGCGGGAACAGCCACTGTTACTGCATCTGACCCCAGCTCTAGCGGTTGTGTCTACCCTTCTAGCGTCAGGTGTGTATTTGATCCACCCATCATTTTCTTCTTCTTCTTCAACTTTTCTCTTCGTTTAATATGCCTATCTTTTCTCTTTTCGACTAAAGTTTTAACGTGTTTGTTTGGTTTTCAAACTTGGTGATGTTAGTGTTGAACTTTTTTACTTTTGTTTATCATATTAATAGTAATAGTGGGGGCGGGGCACTTGCATATGTTATTATAGATTGGTTATTATCTTCAAAAGAGAGTTCTCTTTAGGCTTTGTGTTGAAGTGGGGACATTGCTTTGCGATAGGCATATTCGCACTGTGGTAGTGTAATAGTAATAATATTTTTGTGAGCATATAGAGGAGGTTGTCTTGTGCTTTGTAGTTCGGTAGTAAACAATGTTTGTAAGTGAACCAAATAGCTTAGGCCCTGTTCGGTTCGGGATGGTTTTCTGTTTCCATTTTTAAAATTATTAAAAATTAAATCCAGTTTC

Coding sequences of Glyma05g00470

Limit To All Plant Sequences

>Glyma05g00470.1   sequence type=CDS   gene model=Glyma05g00470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCTAGCTCTAGCACTTCTTCTTCTGGCTTTCACCGGCACTTCAAGTGCTACATGGTGCGTTTGCAAGGATGGAAGCGACGCGATCCTGCAGAAGACGTTAGACTATGCTTGTGGAGCTGGTGCTGACTGTAACCCTCTTCACCTAAACGGGCCTTGTTTTCAGCCCAACACCGTCAGGGCCCACTGTAACTACGCCGTGAACAGCTACTTCCAAAAGAAGGGTCAAGCTCAAGGGTCATGCGAGTTTGCGGGAACAGCCACTGTTACTGCATCTGACCCCAGCTCTAGCGGTTGTGTCTACCCTTCTAGCGTCAGCGCTGCAGGCACTGGTACAACTCCTGTGACTACTACACCAACAATGGGCACTACTCCTACAACTGGAACTCCATCAACAAGCACCGGCACCGGCACTGGCACCGGCACCACCACTGGTACCACTCCATACAGCACAACACCTGGAGTATTAGGAGGCATTGGCAGTGGCATGGGACCTTCAGGATCCGGCATGAACGATGAAAGTCACGGTGGCATTAGATTTGTTCACAGCAGTAGTTTCTTCTCGATCGCGATCGCCCTCATCTCTGCCTTCATGATGCTCTGCTGGGGTTGA

>Glyma05g00470.2   sequence type=CDS   gene model=Glyma05g00470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCTAGCTCTAGCACTTCTTCTTCTGGCTTTCACCGGCACTTCAAGTGCTACATGGTGCGTTTGCAAGGATGGAAGCGACGCGATCCTGCAGAAGACGTTAGACTATGCTTGTGGAGCTGGTGCTGACTGTAACCCTCTTCACCTAAACGGGCCTTGTTTTCAGCCCAACACCGTCAGGGCCCACTGTAACTACGCCGTGAACAGCTACTTCCAAAAGAAGGGTCAAGCTCAAGGGTCATGCGAGTTTGCGGGAACAGCCACTGTTACTGCATCTGACCCCAGCTCTAGCGGTTGTGTCTACCCTTCTAGCGTCAGGTGTGTATTTGATCCACCCATCATTTTCTTCTTCTTCTTCAACTTTTCTCTTCGTTTAATATGCCTATCTTTTCTCTTTTCGACTAAAGTTTTAACGTGTTTGTTTGGTTTTCAAACTTGGTGA

Predicted protein sequences of Glyma05g00470

Limit To All Plant Sequences

>Glyma05g00470.1   sequence type=predicted peptide   gene model=Glyma05g00470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALALALLLLAFTGTSSATWCVCKDGSDAILQKTLDYACGAGADCNPLHLNGPCFQPNTVRAHCNYAVNSYFQKKGQAQGSCEFAGTATVTASDPSSSGCVYPSSVSAAGTGTTPVTTTPTMGTTPTTGTPSTSTGTGTGTGTTTGTTPYSTTPGVLGGIGSGMGPSGSGMNDESHGGIRFVHSSSFFSIAIALISAFMMLCWG*

>Glyma05g00470.2   sequence type=predicted peptide   gene model=Glyma05g00470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALALALLLLAFTGTSSATWCVCKDGSDAILQKTLDYACGAGADCNPLHLNGPCFQPNTVRAHCNYAVNSYFQKKGQAQGSCEFAGTATVTASDPSSSGCVYPSSVRCVFDPPIIFFFFFNFSLRLICLSFLFSTKVLTCLFGFQTW*

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