Report for Sequence Feature Glyma05g00460
Feature Type: gene_model
Chromosome: Gm05
Start: 215745
stop: 222301
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g00460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G61060 AT
Annotation by Michelle Graham. TAIR10: histone deacetylase 5 | chr5:24567137-24570917 REVERSE LENGTH=660
SoyBase E_val: 0 ISS
GO:0006487 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0016575 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone deacetylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004407 GO-mf
Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity
SoyBase N/A ISS
KOG1342
KOG
Histone deacetylase complex, catalytic component RPD3
JGI ISS
PTHR10625 Panther
HISTONE DEACETYLASE
JGI ISS
PTHR10625:SF22 Panther
HISTONE DEACETYLASE-RELATED
JGI ISS
PF00850 PFAM
Histone deacetylase domain
JGI ISS
UniRef100_B9H356 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Populus trichocarpa RepID=B9H356_POPTR
SoyBase E_val: 0 ISS
UniRef100_I1JZJ1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JZJ1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g00460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g00460
Paralog Evidence Comments
Glyma17g08581 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g00460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g021400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g00460
Coding sequences of Glyma05g00460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g00460.1 sequence type=CDS gene model=Glyma05g00460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACGTGAAAACGACAACAGCGCCAAAAGCAGTGTCAACGGTCAGCGCCGCGTGGGTTTACTCTACGACGAGAGGATGTGCAAGCACCACACACCAGACGACGAGGACCATCCCGAGACCCCCAATCGCATCAGAGCTATTTGGAACAAACTCCAAAGCACCGGCGTTCCCCAACGATGCGTGATTTTGGAGGCCAAAGAAGCTGAGGACAAACATCTACTGTTAGTGCATTCTGAAAATCATGTTAATCTGATTAAGAACATCAGCTCAAAGCAGTTCAATTCGCGGAGGCATAAGATTGCCTCAAAATTGGATTCCATATATTTTAATGAAGGTTCATCGGAAGCTGCGTACCTTGCTGCTGGCTCTGCAGTAGAGGTTGTTGAAAGAGTGGCAAGCAGGGAATTGGATTCTGCTGTTGCCATTGTTAGGCCTCCAGGTCATCATGCAGAACAAAATGAAGCTATGGGATTCTGTCTGTTCAACAATGTGGCAGTTGCTGCAAGATATCTCTTAGATGAAAGACCAGAATTAGGTGTGAAGAAAATATTAATTGTTGATTGGGATGTCCATCATGGAAATGGTACTCAGAAAATGTTCTGGAATGATTCTCGAGTTTTATTCTTTTCCGTTCACAGGCATGAGTTTGGGAGTTTTTATCCAGCTAATGATGATGGATTTTATACCATGATTGGAGAAGGAGCAGGTGCTGGATATAATATAAATGTCCCCTGGGAGAATGGGCGATGTGGTGATGCAGATTACTTTGCAGTGTGGGACCACATCTTGCTTCCTGTTGCTAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGAGGATGCCGTGTCACACCATTTGGTTATTCTGTTCTGTTAGAGAAGTTGATGAATTTTGCTGAAGGTAGGATTGTACTGATTTTAGAAGGAGGATATAACCTTGATTCCATCGCAAAATCAATGCATGCCTGCTTGGAAGTTTTGCTAGAGGACAAGCCTGTTATTGGATCCTCAGAGGCCTATCCATTTGAATCTACGTGGCGTGTGATTAAAGCGGTTCTCCTGGAGTTAAGTCCCTTTTGGCCTACACTTGCATGTGAATTACCGCAAAAGTTAATCTCACAAATGGCACCACCTCCGCATACTCTTGTCTCAAGCTCTGACTCTGAGGCTGAGGATGATAAGGGTGCACCAAGTTCAGAAAATTTTGTTGAACTTCTTGAGGATGTCATAAAACCACTTTCCAAACTGAAAGTTGATGCTGATGAAGATACTGATGTTTCTAGTACTTGGCGATCTGAATTGTCAAATGTTTATATATGGTATGCCTCATATGGATCAAATATGTGGAAGGCAAGATTAAATTGCTACCTAGCAGGTGGACAGGTGGAAGGTATGCAGAAGGGGTGTTCTGGTTCAGTGAATAGAACTCTGCCAAAAGAGATCCTGTGGAAGACTTTCCCTTGTCATATATTTTTTGGTCGTGATTCATCACATTCATGGGGTATGGGAGGCGTTGCATTTCTTAATCCTGAGAAAAGTTTTCAGCACAACACCTATATGTGCCTGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTGTTTCAGGAAAATGGTTTAAGCCTTGATGCGGGCTCTCCTTTATTTGATATAACTACTCTGAATGCTATCTCTTACAAGGAGTTCCACTCTCTGGAGGTTGTCAAGGGTGCTTGGTATGGCAATGTTGTCTACTTAGGAAAGGAGCTGGATATTCCAGTAATTACCATGACGTGTTCTCTTCTTGATATTGAACGTTTCAAATCTGGGAAGCTACCATTGCGTGCCCCTAATAAAGCGTATGCAAACACCTTAATAAAAGGGTTGGTAGATGGAGAACAGCTTTCAGAGGTGGAAGCCATCGCTTACATAGAAGGTGCTGCTAAATCATTGTAG
Predicted protein sequences of Glyma05g00460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g00460.1 sequence type=predicted peptide gene model=Glyma05g00460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MERENDNSAKSSVNGQRRVGLLYDERMCKHHTPDDEDHPETPNRIRAIWNKLQSTGVPQRCVILEAKEAEDKHLLLVHSENHVNLIKNISSKQFNSRRHKIASKLDSIYFNEGSSEAAYLAAGSAVEVVERVASRELDSAVAIVRPPGHHAEQNEAMGFCLFNNVAVAARYLLDERPELGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGSFYPANDDGFYTMIGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCRVTPFGYSVLLEKLMNFAEGRIVLILEGGYNLDSIAKSMHACLEVLLEDKPVIGSSEAYPFESTWRVIKAVLLELSPFWPTLACELPQKLISQMAPPPHTLVSSSDSEAEDDKGAPSSENFVELLEDVIKPLSKLKVDADEDTDVSSTWRSELSNVYIWYASYGSNMWKARLNCYLAGGQVEGMQKGCSGSVNRTLPKEILWKTFPCHIFFGRDSSHSWGMGGVAFLNPEKSFQHNTYMCLYKISLEQFNDILFQENGLSLDAGSPLFDITTLNAISYKEFHSLEVVKGAWYGNVVYLGKELDIPVITMTCSLLDIERFKSGKLPLRAPNKAYANTLIKGLVDGEQLSEVEAIAYIEGAAKSL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
