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Report for Sequence Feature Glyma05g00351

Feature Type:gene_model
Chromosome:Gm05
Start:146479
stop:150189
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g00351
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G29575AT Annotation by Michelle Graham. TAIR10: ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231 SoyBaseE_val: 1.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF07897PFAM Protein of unknown function (DUF1675) JGI ISS
UniRef100_B9RLN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLN0_RICCO SoyBaseE_val: 5.00E-31ISS
UniRef100_I1JZH8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JZH8_SOYBN SoyBaseE_val: 3.00E-63ISS

Expression Patterns of Glyma05g00351
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g00351 not represented in the dataset
Glyma05g00351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g00351
ParalogEvidenceComments
Glyma17g08691 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g00351 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g020400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g00351
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g00351
>Glyma05g00351.2   sequence type=transcript   gene model=Glyma05g00351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGTGTAAAGCACTTATATCACACTTTCATCCAAAATATAAAACTTTTTTTTTTGGTAGAAAAGCTCCCAAAAACGGTTAAGGAATTTTTAGTCTTTGATCCAAACAGGCTCATCGTAGAAATCCTCGTAACTCCCTTTCCCTCTGTGGAGGAAGTGGATACGGTTTTCATTCTCCAAATTTTATGTCTGTAACTCGTTTGTTCTTTTCTCTTTCAAAGGGAATACAGGCATTCTTCAAAGGAGTTCTTCAGTTCAATGACTTCACCTTTCTCTTGGATTTCAATGGAGGAGGGTTTTTATTCTGAGAAACCATACACCAACTCTGAGCAGATAGACCTTACTCTCAAGCTTTCTCCCTGTGGTCAAAATGCAGAAGAAAAAAAGATGGTGCTGGCAAGGTCATCATCATCAATGGTTGTGGAGGAAGCCAAGAACACTATGGGGACAAATGCAGAAGAAGAAAAGATGGTGATAGTAAGGTTTGGGGACTTGCAAACAATGAGAAGAGTGAGGACTGGGAAGAGATTATTAATGAAGAAGAAGCTAATGGCTGCGGCTGCTGAGGCAAAGAAGTCTCTTCCAGTGTCTCCGGCCGGTGGTCCTCAGCCTCTACCTCACTCAATTGATAACAATTTCAAGACATTTGCAAATCCTTGTCGGGATGCATGGCATGAGGGAGCTGGTTCCAACTTCCAGACACCACCCAAGAAGGAAAATGATTCCATGCTTTCATCAGTAGCAATTCAGGAAATGACACCGTGGCCCTCTGATACTATGATAGAGAGGCCAGCCAAAAAGCCTAAGCATGTTAATTCCTATCAGGAAAGTGAGGCAACGGACATTGTGAGACAAATGCCTTGTGTGATTACAACTGGAGGTGGCACAACTGGGAAGAGAACAGAAGGGCTTTTGTACAAGTATAAGAGAGGCCAAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCTCTCCCCAACGGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTTAGTTTATATCAATGGAGATGGGGCTGGTTTATCACCAGGGCCGTGGAAACCATAAGGCCAATCAGACCTTTGTCTTAGGCCCCCAAGAGTTTTT
Coding sequences of Glyma05g00351
>Glyma05g00351.1   sequence type=CDS   gene model=Glyma05g00351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCACCTTTCTCTTGGATTTCAATGGAGGAGGGTTTTTATTCTGAGAAACCATACACCAACTCTGAGCAGATAGACCTTACTCTCAAGCTTTCTCCCTGTGGTCAAAATGCAGAAGAAAAAAAGATGGTGCTGGCAAGGTCATCATCATCAATGGTTGTGGAGGAAGCCAAGAACACTATGGGGACAAATGCAGAAGAAGAAAAGATGGTGATAGTAAGGTTTGGGGACTTGCAAACAATGAGAAGAGTGAGGACTGGGAAGAGATTATTAATGAAGAAGAAGCTAATGGCTGCGGCTGCTGAGGCAAAGAAGTCTCTTCCAGTGTCTCCGGCCGGTGGTCCTCAGCCTCTACCTCACTCAATTGATAACAATTTCAAGACATTTGCAAATCCTTGTCGGGATGCATGGCATGAGGCAGGAGCTGGTTCCAACTTCCAGACACCACCCAAGAAGGAAAATGATTCCATGCTTTCATCAGTAGCAATTCAGGAAATGACACCGTGGCCCTCTGATACTATGATAGAGAGGCCAGCCAAAAAGCCTAAGCATGTTAATTCCTATCAGGAAAGTGAGGCAACGGACATTGTGAGACAAATGCCTTGTGTGATTACAACTGGAGGTGGCACAACTGGGAAGAGAACAGAAGGGCTTTTGTACAAGTATAAGAGAGGCCAAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCTCTCCCCAACGGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTTAGTTTATATCAATGGAGATGGGGCTGGTTTATCACCAGGGCCGTGGAAACCATAA

>Glyma05g00351.2   sequence type=CDS   gene model=Glyma05g00351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCACCTTTCTCTTGGATTTCAATGGAGGAGGGTTTTTATTCTGAGAAACCATACACCAACTCTGAGCAGATAGACCTTACTCTCAAGCTTTCTCCCTGTGGTCAAAATGCAGAAGAAAAAAAGATGGTGCTGGCAAGGTCATCATCATCAATGGTTGTGGAGGAAGCCAAGAACACTATGGGGACAAATGCAGAAGAAGAAAAGATGGTGATAGTAAGGTTTGGGGACTTGCAAACAATGAGAAGAGTGAGGACTGGGAAGAGATTATTAATGAAGAAGAAGCTAATGGCTGCGGCTGCTGAGGCAAAGAAGTCTCTTCCAGTGTCTCCGGCCGGTGGTCCTCAGCCTCTACCTCACTCAATTGATAACAATTTCAAGACATTTGCAAATCCTTGTCGGGATGCATGGCATGAGGGAGCTGGTTCCAACTTCCAGACACCACCCAAGAAGGAAAATGATTCCATGCTTTCATCAGTAGCAATTCAGGAAATGACACCGTGGCCCTCTGATACTATGATAGAGAGGCCAGCCAAAAAGCCTAAGCATGTTAATTCCTATCAGGAAAGTGAGGCAACGGACATTGTGAGACAAATGCCTTGTGTGATTACAACTGGAGGTGGCACAACTGGGAAGAGAACAGAAGGGCTTTTGTACAAGTATAAGAGAGGCCAAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCTCTCCCCAACGGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTTAGTTTATATCAATGGAGATGGGGCTGGTTTATCACCAGGGCCGTGGAAACCATAA
Predicted protein sequences of Glyma05g00351
>Glyma05g00351.1   sequence type=predicted peptide   gene model=Glyma05g00351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSPFSWISMEEGFYSEKPYTNSEQIDLTLKLSPCGQNAEEKKMVLARSSSSMVVEEAKNTMGTNAEEEKMVIVRFGDLQTMRRVRTGKRLLMKKKLMAAAAEAKKSLPVSPAGGPQPLPHSIDNNFKTFANPCRDAWHEAGAGSNFQTPPKKENDSMLSSVAIQEMTPWPSDTMIERPAKKPKHVNSYQESEATDIVRQMPCVITTGGGTTGKRTEGLLYKYKRGQVCIVCVCHGSFLSPTEFVMHAGGKEVADPMKHITVCSDLVYINGDGAGLSPGPWKP*

>Glyma05g00351.2   sequence type=predicted peptide   gene model=Glyma05g00351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSPFSWISMEEGFYSEKPYTNSEQIDLTLKLSPCGQNAEEKKMVLARSSSSMVVEEAKNTMGTNAEEEKMVIVRFGDLQTMRRVRTGKRLLMKKKLMAAAAEAKKSLPVSPAGGPQPLPHSIDNNFKTFANPCRDAWHEGAGSNFQTPPKKENDSMLSSVAIQEMTPWPSDTMIERPAKKPKHVNSYQESEATDIVRQMPCVITTGGGTTGKRTEGLLYKYKRGQVCIVCVCHGSFLSPTEFVMHAGGKEVADPMKHITVCSDLVYINGDGAGLSPGPWKP*






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