SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60980 | AT | Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:24543988-24546027 FORWARD LENGTH=459 | SoyBase | E_val: 6.00E-130 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0116 | KOG | RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains | JGI | ISS | |
| PTHR10693 | Panther | RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR10693:SF8 | Panther | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF02136 | PFAM | Nuclear transport factor 2 (NTF2) domain | JGI | ISS | |
| UniRef100_B9RLM4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLM4_RICCO | SoyBase | E_val: 1.00E-174 | ISS |
| UniRef100_I1JZH6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZH6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g00330 not represented in the dataset |
Glyma05g00330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g08710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g020200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g00330.1 sequence type=CDS gene model=Glyma05g00330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGCCGGAAACAATCCCTCCCACTACTCCCAGTGCTCAAGTTGTCGGCAACGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAGAATTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAACCAGATCAGACAGCAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCATGAAAAGATTATTTCCCTGAAATATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATAAGGGAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTATGTCTTAAATGACGTCTTTAGGTTCATTGAGGAGAATGACACACCTCAGTTAAATTCTTCCACAGTAAGTGTCATCAATGAAAATGCTGAGGCAGTGCACGAGCCAGAATCAGAGGATCTGCATGCTCTCAAACATCTTGTGGAAGACACTGCAACTTTGGCAGAGGGTGAGAACCTTAATAATGGTGCTGAAGTTTATCATCCTCAGGATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCCCTACTGATTTAAGTCAGAATGATATTGTTACTGTTGATGATTCAACTTCTGCTGTCCCGGATGATGCACCAAGGAGATCATATGCAGCCATTGTAATGAAAAGTCATGTAGCATCTGGTCATGTCTATGTTCCCAGCCGAGCTGCAAGAATAGCATATGCTAAATCCAGTGAACAATTGCCTACTACTGCCAATGCCAAATCAACTCCTGCGCCTGAGGCATTAGCTCCTAGTAGTGATAATGCATCTGGGAGCAGTGATGTTCATGAAGAAGCTGAAGGTCACTCCATATACATACGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAAGTCTTTAAGAAATTCGGTCCTATTAAGCATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAAGAATTGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACACGAGTCAGCGGTAGTGGGAGAGGGAGGTACTCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCGCGTGGGAAATTTGGCAGTGGACGTGGTTATAGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCAGCTTCAGCAGCATGA
>Glyma05g00330.1 sequence type=predicted peptide gene model=Glyma05g00330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMPETIPPTTPSAQVVGNAFVEQYYHILHQSPELVHRFYQDSSFLTRSDSNGVMTTVTTVQEIHEKIISLKYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYYVLNDVFRFIEENDTPQLNSSTVSVINENAEAVHEPESEDLHALKHLVEDTATLAEGENLNNGAEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVDDSTSAVPDDAPRRSYAAIVMKSHVASGHVYVPSRAARIAYAKSSEQLPTTANAKSTPAPEALAPSSDNASGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYSGRGGFRSDSFRARGKFGSGRGYSRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSASAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
