SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08060 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2580588-2580983 FORWARD LENGTH=131 | SoyBase | E_val: 6.00E-52 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_A1YQZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Upf2 n=1 Tax=Volvox carteri f. nagariensis RepID=A1YQZ3_VOLCA | SoyBase | E_val: 2.00E-14 | ISS |
| UniRef100_I1JZH5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZH5_SOYBN | SoyBase | E_val: 9.00E-88 | ISS |
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Glyma05g00320 not represented in the dataset |
Glyma05g00320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g08740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g020100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g00320.2 sequence type=transcript gene model=Glyma05g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTTATTTCACAAATTGTATTGTTTCATTTTCATTTAACTTTATTTTAGCTAAACTCATAAATAGTAAATGGTTCCTTGATTTGAGAAAGAAAAAAACCCAGTTGGTATGGCGAAATCGGCGTCGAATTCTGTGATGCAGACCCTGAAGCGGTTCATGAAGAAGCCATGGGAGATCACGGGCCCGTGCGCGGGCCCCGAGTACAAATCCGCATTACCCTTGGCCGTGGAGTACCGCCTCAGCTGCCCCGCCACCGTCAAGGAGAAGCCCATCATCCCCAACTCCCTCCCGGAGACCGTCTACGACATCAAGTACTTCACCCGCGACCAGCGCCGCAACCGCCCTCCCATCCGACGCACCGTTTTGAAGAATCCCGATGTCGAAAAGCTCATGAAGGAGCAGACCTTCGCCTTCTCCGACTTCCCTCCCGTTTATCTCAACTCCATCGTCGAGGAGGACATTAACGCTCGCGGTGGCGGATACCAGTGACTGACAG
>Glyma05g00320.1 sequence type=CDS gene model=Glyma05g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAATCGGCGTCGAATTCTGTGATGCAGACCCTGAAGCGGTTCATGAAGAAGCCATGGGAGATCACGGGCCCGTGCGCGGGCCCCGAGTACAAATCCGCATTACCCTTGGCCGTGGAGTACCGCCTCAGCTGCCCCGCCACCGTCAAGGAGAAGCCCATCATCCCCAACTCCCTCCCGGAGACCGTCTACGACATCAAGTACTTCACCCGCGACCAGCGCCGCAACCGCCCTCCCATCCGACGCACCGTTTTGAAGAATCCCGATGTCGAAAAGCTCATGAAGGAGCAGACCTTCGCCTTCTCCGACTTCCCTCCCGTTTATCTCAACTCCATCGTCGAGGAGGACATTAACGCTCGCGGTGGCGGATACCAGTGA >Glyma05g00320.2 sequence type=CDS gene model=Glyma05g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAATCGGCGTCGAATTCTGTGATGCAGACCCTGAAGCGGTTCATGAAGAAGCCATGGGAGATCACGGGCCCGTGCGCGGGCCCCGAGTACAAATCCGCATTACCCTTGGCCGTGGAGTACCGCCTCAGCTGCCCCGCCACCGTCAAGGAGAAGCCCATCATCCCCAACTCCCTCCCGGAGACCGTCTACGACATCAAGTACTTCACCCGCGACCAGCGCCGCAACCGCCCTCCCATCCGACGCACCGTTTTGAAGAATCCCGATGTCGAAAAGCTCATGAAGGAGCAGACCTTCGCCTTCTCCGACTTCCCTCCCGTTTATCTCAACTCCATCGTCGAGGAGGACATTAACGCTCGCGGTGGCGGATACCAGTGA
>Glyma05g00320.1 sequence type=predicted peptide gene model=Glyma05g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKSASNSVMQTLKRFMKKPWEITGPCAGPEYKSALPLAVEYRLSCPATVKEKPIIPNSLPETVYDIKYFTRDQRRNRPPIRRTVLKNPDVEKLMKEQTFAFSDFPPVYLNSIVEEDINARGGGYQ* >Glyma05g00320.2 sequence type=predicted peptide gene model=Glyma05g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKSASNSVMQTLKRFMKKPWEITGPCAGPEYKSALPLAVEYRLSCPATVKEKPIIPNSLPETVYDIKYFTRDQRRNRPPIRRTVLKNPDVEKLMKEQTFAFSDFPPVYLNSIVEEDINARGGGYQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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