SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22800 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8072020-8074039 FORWARD LENGTH=355 | SoyBase | E_val: 3.00E-170 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG2940 | KOG | Predicted methyltransferase | JGI | ISS | |
| PTHR13090 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF08241 | PFAM | Methyltransferase domain | JGI | ISS | |
| UniRef100_G7J061 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sam-dependent methyltransferase n=1 Tax=Medicago truncatula RepID=G7J061_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JZG1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZG1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g43650 not represented in the dataset |
Glyma04g43650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g257200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g43650.1 sequence type=CDS gene model=Glyma04g43650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGCAGTGTCCCTTTGGCTTCGGCGCAAACACCAATTGCCGTTGGCATTGGCATTTCGCAGATTCTCGACATCTAATTCGAAGGTGAAAATCTTTGATCGCGAGTTGAAGCGCACACAACGTGACCGAGCCGCATGGTTGACTCCCTCACACGACCCTCTTCTTCACACCGTCGCTCAAAATCTCTTGGACCGCTTGCAGGACTGTAAGAAGACTTTTCCAACTGCGCTATGCTTAGGAGGCTCATTACAACCTATCACGCGCTCTCTTTCTGCTCCTCCTGCCCCAGGTGGCGTGGAAAAGCTTATTGTCATGGATGCCTCCTATGATATGCTTCAAGCCTGTAAAAATGCTCACCACAATGCCACCGTTGAGACCCACTTTCTTGTTGCTGACGAAGAGTTTCTTCCTATCAAAGAAAGCTCTGTGGATTTGGTTGTTAGTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTGGAGAAACATTAAAGGAGCTCAGAATAGCTTGTACGTTGGCACAAATGGAGCGTGAAGGAGGGATCAGTCCCCGAGTATCACCTTTGGCACAGGTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTGCTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAATATCCTAAAGAGGGACACAGCGTTAGCAACTGCAGCTATTTATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAAGAAGGGGATCAGCCACTATATCTTTCAACGATATTCAGAAGCAATTTGGAAGCCAAAATTGA
>Glyma04g43650.1 sequence type=predicted peptide gene model=Glyma04g43650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRAVSLWLRRKHQLPLALAFRRFSTSNSKVKIFDRELKRTQRDRAAWLTPSHDPLLHTVAQNLLDRLQDCKKTFPTALCLGGSLQPITRSLSAPPAPGGVEKLIVMDASYDMLQACKNAHHNATVETHFLVADEEFLPIKESSVDLVVSCLGLHWTNDLPGAMIQSRLALKPDGLFLAAILGGETLKELRIACTLAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPGVDVDEYVVKYESALELIEHLRAMGETNALYQMNNILKRDTALATAAIYDSMFSAEDGTVPATFQVIYMTGWREHPSQQKAKRRGSATISFNDIQKQFGSQN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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