Glyma04g43520 - SoyBase

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Report for Sequence Feature Glyma04g43520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	49073130
stop:	49080078
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10000	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin family protein \| chr4:6260707-6263053 REVERSE LENGTH=333	SoyBase	E_val: 3.00E-126	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_F4JKW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin family protein n=1 Tax=Arabidopsis thaliana RepID=F4JKW0_ARATH	SoyBase	E_val: 1.00E-123	ISS
UniRef100_I1JZD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g43520 not represented in the dataset	Glyma04g43520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g43520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g255900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g43520

Limit To All Plant Sequences

>Glyma04g43520.4   sequence type=transcript   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACCAATATAAAACTTGTAAAAAAACTAAACGGTGTTACTGTGAAGGGGTTTGGAGAAGACTGAAATTGCGTTTGGGAAAATCAAGCAAACATGTCACTGTGTGTTCACTACTCTCCATGCAATAGCATTGGTGTTATGCCGCAATTCTGCACCCCCAGGACCAGGACCAGCCATAATAGGAATTGGGATTTGCAGAGACTTAGAATTGTCGCAAAATCAAATTCAGATGCAACCCAATCCACATCCACCTCCCTTCTCTCATTTCTCTGTCCCTTACTCAAGCTCTTCTCTGCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTTTTAGTTTGCAGCTTTTTGAATTTGAGGCATGCCCCTTTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTGGTGATATCGTAAAATACTTGTTTGAGCGATATGGAGAAGGCAGAAGTCCATCATCGGGACTTTTGGAGAGCACTATTTTCACTGGATGGATGCCGACAATACTTCGAGCAGGTAGAGGAATGACGCGTTGGGAACATTCCAGGCCTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATGCTTCTGGATCTAAAGAGGTTCCTTACTTCATTGATCACAACACTGGATTTCAATCTGGGGACTACACAACGATCTTATCTTATTTGTTTGAAACCTATTCAACAGTTATTTTATAACTTCCGCTATCTATATTGGGATGGGATTACTTTGCCACTTGAACAAATTAAACTTACTGGTTAATGACTCAGATCAACGGAATGCTATTGTGCCAAAATGAAGAAAAGGTATGAAAACTTTTGTTTTCAGTATTTTGCAGAACTCTGTTCAACTTCTCTGTTTTCATTATTCGTGTAAGCATGGATCCCATCTTTGCAAGCTGCCTTGTGCGGTTAAAATTAAGCAAAGAGCAGCAAGTGATGCTACTTGTGGTAAAGATAAATGTAATGAACAATTTGATTATGTAGTAAGTACTTTTCCTGAATAATCAGAAAGTTCTTCCACAAATATTGCAATAAATTTGGCCTCAAATGTAAGTTCTTACATTTCTTCACCTTGACTAATTCTTATTTGTTAATTGTAGATTTCCCAACTTTTGTTAAAATCATTATGCA

>Glyma04g43520.5   sequence type=transcript   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACCAATATAAAACTTGTAAAAAAACTAAACGGTGTTACTGTGAAGGGGTTTGGAGAAGACTGAAATTGCGTTTGGGAAAATCAAGCAAACATGTCACTGTGTGTTCACTACTCTCCATGCAATAGCATTGGTGTTATGCCGCAATTCTGCACCCCCAGGACCAGGACCAGCCATAATAGGAATTGGGATTTGCAGAGACTTAGAATTGTCGCAAAATCAAATTCAGATGCAACCCAATCCACATCCACCTCCCTTCTCTCATTTCTCTGTCCCTTACTCAAGCTCTTCTCTGTATAGTAACCCACTATTCTTCTTTCTCGTATCTACCTATGAATGCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTTTTAGTTTGCAGCTTTTTGAATTTGAGGCATGCCCCTTTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTGGTGATATCGTAAAATACTTGTTTGAGCGATATGGAGAAGGCAGAAGTCCATCATCGGGACTTTTGGAGAGCACTATTTTCACTGGATGGATGCCGACAATACTTCGAGCAGGTAGAGGAATGACGCGTTGGGAACATTCCAGGCCTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATGCTTCTGGATCTAAAGAGGTTCCTTACTTCATTGATCACAACACTGGATTTCAATCTGGGGACTACACAACGATCTTATCTTATTTGTTTGAAACCTATTCAACAGTTATTTTATAACTTCCGCTATCTATATTGGGATGGGATTACTTTGCCACTTGAACAAATTAAACTTACTGGTTAATGACTCAGATCAACGGAATGCTATTGTGCCAAAATGAAGAAAAGGTATGAAAACTTTTGTTTTCAGTATTTTGCAGAACTCTGTTCAACTTCTCTGTTTTCATTATTCGTGTAAGCATGGATCCCATCTTTGCAAGCTGCCTTGTGCGGTTAAAATTAAGCAAAGAGCAGCAAGTGATGCTACTTGTGGTAAAGATAAATGTAATGAACAATTTGATTATGTAGTAAGTACTTTTCCTGAATAATCAGAAAGTTCTTCCACAAATATTGCAATAAATTTGGCCTCAAATGTAAGTTCTTACATTTCTTCACCTTGACTAATTCTTATTTGTTAATTGTAGATTTCCCAACTTTTGTTAAAATCATTATGCA

Coding sequences of Glyma04g43520

Limit To All Plant Sequences

>Glyma04g43520.3   sequence type=CDS   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACTGTGTGTTCACTACTCTCCATGCAATAGCATTGGTGTTATGCCGCAATTCTGCACCCCCAGGACCAGGACCAGCCATAATAGGAATTGGGATTTGCAGAGACTTAGAATTGTCGCAAAATCAAATTCAGATGCAACCCAATCCACATCCACCTCCCTTCTCTCATTTCTCTGTCCCTTACTCAAGCTCTTCTCTGCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTTTTAGTTTGCAGCTTTTTGAATTTGAGGCATGCCCCTTTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTGGTGATATCGTAAAATACTTGTTTGAGCGATATGGAGAAGGCAGAAGTCCATCATCGGGACTTTTGGAGAGCACTATTTTCACTGGATGGATGCCGACAATACTTCGAGCAGGTAGAGGAATGACGCGTTGGGAACATTCCAGGCCTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATGCTTCTGGATCTAAAGAGGTTCCTTACTTCATTGATCACAACACTGGATTTCAATCTGGGGACTACACAACGATCTTATCTTATTTGTTTGAAACCTATTCAACAGTTATTTTATAA

>Glyma04g43520.4   sequence type=CDS   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACTGTGTGTTCACTACTCTCCATGCAATAGCATTGGTGTTATGCCGCAATTCTGCACCCCCAGGACCAGGACCAGCCATAATAGGAATTGGGATTTGCAGAGACTTAGAATTGTCGCAAAATCAAATTCAGATGCAACCCAATCCACATCCACCTCCCTTCTCTCATTTCTCTGTCCCTTACTCAAGCTCTTCTCTGCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTTTTAGTTTGCAGCTTTTTGAATTTGAGGCATGCCCCTTTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTGGTGATATCGTAAAATACTTGTTTGAGCGATATGGAGAAGGCAGAAGTCCATCATCGGGACTTTTGGAGAGCACTATTTTCACTGGATGGATGCCGACAATACTTCGAGCAGGTAGAGGAATGACGCGTTGGGAACATTCCAGGCCTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATGCTTCTGGATCTAAAGAGGTTCCTTACTTCATTGATCACAACACTGGATTTCAATCTGGGGACTACACAACGATCTTATCTTATTTGTTTGAAACCTATTCAACAGTTATTTTATAA

>Glyma04g43520.5   sequence type=CDS   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTTTTAGTTTGCAGCTTTTTGAATTTGAGGCATGCCCCTTTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTGGTGATATCGTAAAATACTTGTTTGAGCGATATGGAGAAGGCAGAAGTCCATCATCGGGACTTTTGGAGAGCACTATTTTCACTGGATGGATGCCGACAATACTTCGAGCAGGTAGAGGAATGACGCGTTGGGAACATTCCAGGCCTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATGCTTCTGGATCTAAAGAGGTTCCTTACTTCATTGATCACAACACTGGATTTCAATCTGGGGACTACACAACGATCTTATCTTATTTGTTTGAAACCTATTCAACAGTTATTTTATAA

Predicted protein sequences of Glyma04g43520

Limit To All Plant Sequences

>Glyma04g43520.3   sequence type=predicted peptide   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLCVHYSPCNSIGVMPQFCTPRTRTSHNRNWDLQRLRIVAKSNSDATQSTSTSLLSFLCPLLKLFSARDPSQPRNFTFELATSSLASLSRFAWGTKSIAESSLNKEITSDLPFSLQLFEFEACPFCRRVREALTELDLSVEVYPCPKGSVRHREVVRRTGGKEQFPFIIDQKSGIFIYESGDIVKYLFERYGEGRSPSSGLLESTIFTGWMPTILRAGRGMTRWEHSRPDPPPGKLELFSYENNPNARIVREALCELELPYILQNVGEGSPRMKLLLDASGSKEVPYFIDHNTGFQSGDYTTILSYLFETYSTVIL*

>Glyma04g43520.4   sequence type=predicted peptide   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLCVHYSPCNSIGVMPQFCTPRTRTSHNRNWDLQRLRIVAKSNSDATQSTSTSLLSFLCPLLKLFSARDPSQPRNFTFELATSSLASLSRFAWGTKSIAESSLNKEITSDLPFSLQLFEFEACPFCRRVREALTELDLSVEVYPCPKGSVRHREVVRRTGGKEQFPFIIDQKSGIFIYESGDIVKYLFERYGEGRSPSSGLLESTIFTGWMPTILRAGRGMTRWEHSRPDPPPGKLELFSYENNPNARIVREALCELELPYILQNVGEGSPRMKLLLDASGSKEVPYFIDHNTGFQSGDYTTILSYLFETYSTVIL*

>Glyma04g43520.5   sequence type=predicted peptide   gene model=Glyma04g43520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARDPSQPRNFTFELATSSLASLSRFAWGTKSIAESSLNKEITSDLPFSLQLFEFEACPFCRRVREALTELDLSVEVYPCPKGSVRHREVVRRTGGKEQFPFIIDQKSGIFIYESGDIVKYLFERYGEGRSPSSGLLESTIFTGWMPTILRAGRGMTRWEHSRPDPPPGKLELFSYENNPNARIVREALCELELPYILQNVGEGSPRMKLLLDASGSKEVPYFIDHNTGFQSGDYTTILSYLFETYSTVIL*

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