Glyma04g43440 - SoyBase

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Report for Sequence Feature Glyma04g43440

Feature Type:	gene_model
Chromosome:	Gm04
Start:	49020563
stop:	49026614
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62020	AT	Annotation by Michelle Graham. TAIR10: Coatomer, alpha subunit \| chr1:22919814-22923728 FORWARD LENGTH=1216	SoyBase	E_val: 0	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030126	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG0292	KOG	Vesicle coat complex COPI, alpha subunit	JGI		ISS
PTHR19876	Panther	COATOMER	JGI		ISS
PTHR19876:SF1	Panther	COATOMER BETA SUBUNIT	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF04053	PFAM	Coatomer WD associated region	JGI		ISS
PF06957	PFAM	Coatomer (COPI) alpha subunit C-terminus	JGI		ISS
UniRef100_B9RHB0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coatomer alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RHB0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LCN7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCN7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g43440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g255100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g43440

Limit To All Plant Sequences

>Glyma04g43440.2   sequence type=CDS   gene model=Glyma04g43440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGACGAAATTCGAGACGAAGAGCAACCGTGTGAAGGGCCTGAGCTTCCACAAGAAGCGTCCATGGATCCTTGCGAGCCTCCACAGCGGCGTGATCCAGCTGTGGGACTACCGCATGGGCACCCTGGTCGATCGCTTCGAGGAGCACGAGGGCCCCGTCCGTGGCGTCCACTTCCACGACTCCCAGCCCCTCTTCGTCTCCGGCGGCGACGACTACAAGATCAAGCTGTGGAACTACAAGCTCCACCGCTGCCTCTTCAGCCTCCTGGGCCACCTTGATTACGTCCGCACCGTCCAGTTCCACCACGAGAGCCCCTGGATCGTCTCCGCCAGCGACGACCAGACCATCCGCATCTGGAACTGGCAGTCCCGCACCTGCATTTCCGTCCTCACCGGCCACAACCACTACGTCATGTGCGCCTCTTTCCATCCCCGCGACGATCTCCTCGTCTCCGCCTCCCTCGATCAGACCCTCCGTGTTTGGGACATCTCCCCTCTCAGGAAGAAATCCCCCTCCTCCGACGACATGCCTTTTGGCTCCCCCGACGCCGTCGTCAAGTACGTCTTGGAGGGACACGATCGGGGCGTCAATTGGGCCTCCTTTCACCCCGCTCTCCCCCTCATCGTCTCCGCCGCCGATGACCGCCAGCTCAAGCTCTGGAGAATGAACGATACGAAGGCATGGGAGGTGGATACTTTGAGAGGGCACATGAATAATGTGTCATGTGTTCTTTTTCATGCCAAGCAGGATATTATTGTGTCCAACTCTGAGGACAAGAGTATTCGGGTGTGGGATGCGACCAAGAGGACTGGGATCCAGACGTTTCGCAGGGAGCATGATCGGTTTTGGATTCTGGCTGCACATCCTGAAATGAATCTGTTGGCGGCCGGTCATGATAGTGGGATGATTGTGTTTAAGTTGGAGAGGGAAAGGCCTGCGTTTGCTGTGAGTGGTGATGCTTTGTTCTATACTAGGGACCGGTTTTTGAGGTTCTATGAGTTTTCGACACAGAGAGAGACACAGGTGCTGCCAATTCGGCGGCCTGGATCTCCAAGTCTTAATCAGAGTCCAAGGACTCTTTCTTATAGTCCGAGTGAAAATGCAGTTCTGCTCTGTTCAGATATAGATGGTGGATCTTATGAGCTGTATTGCATATCCAAGGATGGCTATGGCAGGGGTGATTTGCAGGATGCCAAGAAAGGTGTTGGAGTATCAGCAGTTTTCGTGGCTCGGAATAGGTTTGCTGTGCTTGACAGAAGCAGCAACCAAGTCCTTTTGAAAAATCTCAAGAATGAGATTGTTAAAAAGACTGTTCTTCCTATTGCCACTGATGCTATATTCTATGCAGGAACGGGCAACTTGATTTGTAGGTCAGAGGATAGGGTTGTCCTGTTTGATCTTCAGCAGAGAATTGTTCTTGGTGAACTCCAGACCCCTTTTGTCAAGTATATTGTCTGGTCTAGTGATATGGAAACTGTTGCTTTGCTCAGCAAACATGCCATTATCATTGCTAACAAGAAGCTTGTGCACCAATGCACTCTCCATGAGACCATTCGTGTAAAAAGTGGAGCCTGGGATGACAATGGTGTTTTCATCTACACGACATTAAATCACATCAAATACTGCCTTCCCAATGGAGATAGTGGGATAATAAAGACATTGGATGTCCCCATTTACATCACTAAGGTTTCTGGAAACACCATCTTCTGCTTGGATCGGGATGGGAAGAAAAGAGCCATAGCTATTGATTCGACTGAATATATTTTTAAACTCTCCTTGTTGAAGAAAAAATATGACCATGTCATGAACATGATAAAGAATTCGCAGCTTTGTGGGCAGGCTGTGATTGCTTATCTCCAGCAAAAAGGCTTTCCTGAGGTTGCCCTCCATTTTGTGAATGATGAGAGAATACGGTTCAATTTGGCGTTGGAGAGTGGAAACATTCAAATTGCTGTTGCGTCAGCTACAGCGATTGATGAGAAAGATTACTGGTACCGTTTAGGGGTTGAGGCTCTTCGTCAGGGTAATGCTGGGATTGTGGAGTATGCATATCAGCGTACCAAAAATTTTGAGAGATTATCTTTCCTTTATCTCATCACGGGTAACTTGGAGAAACTTTCGAAGATGCTGAAAATTGCTGAAGTAAAGAATGATGTAATGGGCCAGTTTCACAATGCCATGTATATGGGTGATGTCCGAGAACGGGTTAAAATCTTGGAGAATGTGGGTCATTTGCCTCTTGCTTACATCACCGCATCAGTCCATGGGCTACATGATGTTGCCGAACGGCTTGCAGCTGAACTTGGGAACAATGTTCCATCTTTACCCGGGGGAAAAGTACCGTCTCTTTTAATGCCACCGTCACCGCTCACATGTGGTGGTGATTGGCCCCTTCTTAGGGTCATGCGAGGCATATTTGATGGCGGGCTTGACAACATGAATCGGGGTGCCGCTGATGAAGAATACGAGGCAGCTGATGCTGATTGGGGTGAGGAGCTTGACTTGGTTGATGTGGATGACTTACAAAATGGGGAAGTTGCTGCAATTTTGGAGGATGGGGAAGTGGCAGATGAAAATGAAGAAGAGGGTGGATGGGAGATGGAAGATTTAGAGCTGCCCCCTGAAGCTGACACCCCAAAGGCTTTTCTCAGTACAAGATCTGTTTTTGTGGCTCCAACCCCTGGCTTGCCTGTAAGCCAGATATGGATTCAGAAATCGTCTCTTGCAGCAGATCATGCAGCTGCTGGCAACTTTGATACTGCAATGCGGTTACTGAACCGTCAGCTTGGGATAACAAACTTTTCTCCCTTGAGATCCACATTTCTTGATCTTAGTACTGGCAGTCATTCCTATCTGCGTGCATTTTCATCTGCTCCGGTGATATCTTTTGCCATTGAAAGAGGTTGGACTGAGTCATCAAGTGCAAATGTAAGAGGCCTGCCAGCATTGCCTCTCAGACTGCCACAATTGGATGAAAGGCTCAGAGCTGGTTATAAGTCAACAACTGCCGGGAAATTTACCGAGGCTCTTAAGGCATTCACCAGTATTCTTCATGCTATTCCCTTGATTGTGGTTGAGTCAAGGAGAGAAGTAGATGAGGTGAAGGAATTAATCATCATAGTCAAAGAATATGTTTTGGGTTTGCAGATGGAGTTGAAGAGAAGAGAAATGAAGGACAATCTAACTCGGCAGCAGGAGCTTGCAGCTTATTTCACTCACTGCAACCTTCAAACCCCACATTTGAGGCTAGCTTTGTTGAATGCAATGACTGTGTGCTTCAAGGCAAAGAACCTTGCCTCAGCTGCTAACTTTGCCAGGAGGCTGCTTGAGACCAATCCTACTGTTGAAACCCAAGCCAAGACAGCAAGAAAAGTGCTTGCAGCTGCAGAGACAAATATGACTGATGCCAAACCATTGAACTATGATTTCAGAAACCCATTTGTTACTTGTGGTGCAACCTATGTGCCCATCTATCGAGGACAAAAGGATGTCTCTTGCCCTTACTGCACTTCCCGTTTTGTGCCAAGCCAAGAGGGACAGCTATGTACTGTGTGTGATCTTGCAGTGGTCGGGGCAGATGCTTCTGGATTGCTGTGTTCACCTTCCCAGATACGTTGA

Predicted protein sequences of Glyma04g43440

Limit To All Plant Sequences

>Glyma04g43440.2   sequence type=predicted peptide   gene model=Glyma04g43440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTKFETKSNRVKGLSFHKKRPWILASLHSGVIQLWDYRMGTLVDRFEEHEGPVRGVHFHDSQPLFVSGGDDYKIKLWNYKLHRCLFSLLGHLDYVRTVQFHHESPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPRDDLLVSASLDQTLRVWDISPLRKKSPSSDDMPFGSPDAVVKYVLEGHDRGVNWASFHPALPLIVSAADDRQLKLWRMNDTKAWEVDTLRGHMNNVSCVLFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDALFYTRDRFLRFYEFSTQRETQVLPIRRPGSPSLNQSPRTLSYSPSENAVLLCSDIDGGSYELYCISKDGYGRGDLQDAKKGVGVSAVFVARNRFAVLDRSSNQVLLKNLKNEIVKKTVLPIATDAIFYAGTGNLICRSEDRVVLFDLQQRIVLGELQTPFVKYIVWSSDMETVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVSGNTIFCLDRDGKKRAIAIDSTEYIFKLSLLKKKYDHVMNMIKNSQLCGQAVIAYLQQKGFPEVALHFVNDERIRFNLALESGNIQIAVASATAIDEKDYWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLEKLSKMLKIAEVKNDVMGQFHNAMYMGDVRERVKILENVGHLPLAYITASVHGLHDVAERLAAELGNNVPSLPGGKVPSLLMPPSPLTCGGDWPLLRVMRGIFDGGLDNMNRGAADEEYEAADADWGEELDLVDVDDLQNGEVAAILEDGEVADENEEEGGWEMEDLELPPEADTPKAFLSTRSVFVAPTPGLPVSQIWIQKSSLAADHAAAGNFDTAMRLLNRQLGITNFSPLRSTFLDLSTGSHSYLRAFSSAPVISFAIERGWTESSSANVRGLPALPLRLPQLDERLRAGYKSTTAGKFTEALKAFTSILHAIPLIVVESRREVDEVKELIIIVKEYVLGLQMELKRREMKDNLTRQQELAAYFTHCNLQTPHLRLALLNAMTVCFKAKNLASAANFARRLLETNPTVETQAKTARKVLAAAETNMTDAKPLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCTSRFVPSQEGQLCTVCDLAVVGADASGLLCSPSQIR*

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