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Report for Sequence Feature Glyma04g43420

Feature Type:gene_model
Chromosome:Gm04
Start:49001800
stop:49016573
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g43420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G09140AT Annotation by Michelle Graham. TAIR10: MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 SoyBaseE_val: 0ISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006298GO-bp Annotation by Michelle Graham. GO Biological Process: mismatch repair SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006312GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic recombination SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016444GO-bp Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0000790GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromatin SoyBaseN/AISS
GO:0000795GO-cc Annotation by Michelle Graham. GO Cellular Compartment: synaptonemal complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005712GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chiasma SoyBaseN/AISS
GO:0032389GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MutLalpha complex SoyBaseN/AISS
GO:0032390GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MutLbeta complex SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0030674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding, bridging SoyBaseN/AISS
GO:0030983GO-mf Annotation by Michelle Graham. GO Molecular Function: mismatched DNA binding SoyBaseN/AISS
KOG1979 KOG DNA mismatch repair protein - MLH1 family JGI ISS
PTHR10073Panther DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) JGI ISS
PTHR10073:SF11Panther DNA MISMATCH REPAIR PROTEIN PMS2-RELATED JGI ISS
PF01119PFAM DNA mismatch repair protein, C-terminal domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
UniRef100_G7J070UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein Mlh1 n=1 Tax=Medicago truncatula RepID=G7J070_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A66FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A66F related cluster n=1 Tax=unknown RepID=UPI000233A66F SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g43420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g43420 not represented in the dataset
Glyma04g43420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g43420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g254900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g43420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g43420
>Glyma04g43420.1   sequence type=CDS   gene model=Glyma04g43420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCGAGAATCAGAGGCGAATGGAGCCCCCTAAAATTCAGCGGCTGAGCGAGTCGGTGGTGAACCGAATCGCCGCCGGCGAGGTCATCCAACGCCCCGTCTCCGCCGTGAAGGAGCTCGTGGAGAACAGCCTCGACGCCGCCTCCTCCTCCGTCAGCCTCCTCATCAAGGATGGCGGCCTCAAACTCATCCAAGTCTCCGACGACGGCCACGGAATCCGTTTTGAGGACTTGCCCATACTCTGCGAGCGCCACACGACCTCCAAGCTGTCCTCGTTTGAGGACTTGCAGCGCATTAAGTCGATGGGCTTTCGCGGCGAGGCTCTCGCCAGCATGACCTACGTCGCTCACGTCACCGTCACCACCATTACCAAACCCCAATTGCACGGTTACAGGGTATCCTATAGAGATGGTGTCATGGAGCACCAACCCAGGCCATGTGCTGCTGTTAAAGGAACGCAGATAATGGTTGAAAATCTGTTCTATAACATGGCTGCAAGGAGGAAGACGCTGCAAAATTCTTCTGATGATTATTCAAAGATTGTAGACTTAGTAAGCCGGTTTGCTATTCATCATATTAATGTCAGTTTCTCGTGCAGAAAGCATGGAGCTGTTAGGGCTGATGTTCACACTGTGGCCATGTCTTCAAGGCTCGATGCCATCAAATCTGTCTATGGGGTCTCAGTTGCTCGCAATCTGATTGAAATTGAAGCCTCAGACAATGATCCATCTACTTCGGTTTTTGAGATGCATGGCTACATGTCCAATGCAAATTATGCTGCAAAGAAAATCACCATGGTGCTTTTCATCAATGATCGACTGGTTGAGTGTTCTGCATTGAAGAGGGCTATTGAAATTGTTTATGCAGCGACATTACCAAAAGCATCTAAGCCCTTTATATATATTTCAATTGTTTTACCACCAGAGAATATTGATGTCAATGTACATCCAACAAAGAGAGAGGTGAGCCTTTTAAATCAGGAAGTCATCATTGAGAAGATACAGTCTGTGGTTGAATCAACATTGAGGAGTTCCAACGAGGCACGGACATTTCAAGAACAATCAGCTGGGCAATCTTCATCGCCTCGTATTAATACAAGTAAGGAGGTTAACCTCAGCCCTATGCCAACAGGTTCAAGATTATTGAAAGTGCCGGTACATAAGTTGGTTAGAACAGATTCATTAGATCCTGCTGGAAGATTACATGCCTACACGCAAATTATGTCTGATAGACATCTTGAAAAGAGTGCTAGTTTGAATGCAATAAGGTCTTCGGTTAGACAAAGAAGGAACCCAAAAGATTCTTTAGAACTCACTAGTGTTCAAGAGCTTCTTGACAAGATCAATAGCAACTGTGACCCTGGCATGACAGACATCATAAGGCATTGCACATATGTTGGAATGGCAGATGATGTTTTTGCTTTGCTTCAGCATAATACTCGTCTTTATCTTGCAAATGTTGTAAACTTGAGCAAAGAACTTATGTATCAGCAAGTTCTTAGCCGTTTTGGCCATTTCAATGCCATTCAACTAAATGATCCAGTCCCCTTGAAAGACTTGATTATATTGGCTCTGAAGGAAGAGGATATAGATTCAGAATGTAATGATGATGACAGCTTAAAAGAGAAGATTGCAGAAATGAACACAGAATTGCTGAAACAAAAGGCAGAAATGCTGGAGGAGTATTTTGGCATTCATATTGATGAGCATGGAAATGTCTCTAGACTTCCTGTGATACTTGACCAGTACACACCTGACATGGATCATGTCCCTGAATTTGCTCTTTGTTTGGGCAATGATGTTGATTGGGAAGATGAAAAGAATTGCATTCAAGCAGTTTCAGCTGCTTTGGGAAACTTCTATGCTATGCATCCACTGATGTTGCCCAATCCGTCTGGTGAAGGTTTGCTTTTTTACAAGAAGAGAAAAATGATGGATGGTTATGCTGAAGAGAATACCTGTGATAATACTGGGAGTGACGTGATTGACAATAAAGTTGAGCATGAAATGTTTTCTGAAGCTGAGACTGCATGGGCCCAGCGTGAATGGTCAATACAACATGTGCTTTTTCCTTCCATGAGACTCTTTTTCAAACCACCTGCTTCTATGGCTACTGATGGAACCTTTGTTCAGGTAACTTCGCTGGAGAAACTGTATAAGATTTTTGAAAGATGCTAA
Predicted protein sequences of Glyma04g43420
>Glyma04g43420.1   sequence type=predicted peptide   gene model=Glyma04g43420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESENQRRMEPPKIQRLSESVVNRIAAGEVIQRPVSAVKELVENSLDAASSSVSLLIKDGGLKLIQVSDDGHGIRFEDLPILCERHTTSKLSSFEDLQRIKSMGFRGEALASMTYVAHVTVTTITKPQLHGYRVSYRDGVMEHQPRPCAAVKGTQIMVENLFYNMAARRKTLQNSSDDYSKIVDLVSRFAIHHINVSFSCRKHGAVRADVHTVAMSSRLDAIKSVYGVSVARNLIEIEASDNDPSTSVFEMHGYMSNANYAAKKITMVLFINDRLVECSALKRAIEIVYAATLPKASKPFIYISIVLPPENIDVNVHPTKREVSLLNQEVIIEKIQSVVESTLRSSNEARTFQEQSAGQSSSPRINTSKEVNLSPMPTGSRLLKVPVHKLVRTDSLDPAGRLHAYTQIMSDRHLEKSASLNAIRSSVRQRRNPKDSLELTSVQELLDKINSNCDPGMTDIIRHCTYVGMADDVFALLQHNTRLYLANVVNLSKELMYQQVLSRFGHFNAIQLNDPVPLKDLIILALKEEDIDSECNDDDSLKEKIAEMNTELLKQKAEMLEEYFGIHIDEHGNVSRLPVILDQYTPDMDHVPEFALCLGNDVDWEDEKNCIQAVSAALGNFYAMHPLMLPNPSGEGLLFYKKRKMMDGYAEENTCDNTGSDVIDNKVEHEMFSEAETAWAQREWSIQHVLFPSMRLFFKPPASMATDGTFVQVTSLEKLYKIFERC*






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