Glyma04g43400 - SoyBase

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Report for Sequence Feature Glyma04g43400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48982844
stop:	48986251
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77930	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr1:29301184-29302467 FORWARD LENGTH=271	SoyBase	E_val: 9.00E-87	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_B9RJD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein DNAj, putative n=1 Tax=Ricinus communis RepID=B9RJD2_RICCO	SoyBase	E_val: 1.00E-83	ISS
UniRef100_I1JZC1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZC1_SOYBN	SoyBase	E_val: 5.00E-124	ISS

Expression Patterns of Glyma04g43400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g43400 not represented in the dataset	Glyma04g43400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43400

Paralog	Evidence	Comments
Glyma06g11260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g254700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g43400

Limit To All Plant Sequences

>Glyma04g43400.2   sequence type=transcript   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGATGACTCATGACACAGGGAAAAAAAGATTCGCGGCTCTTATTCATCAAAAAAATGAAAGATTCTGTGAGATTGATGGTGTTAGTTATCGTTGAGGGGCCCACCCAGAAGCTCTTCTCTCCGTTCACAAGGAAGGGTTTGGTACTTTTGTAACTCTCGAATTGGCTTCAAAAATCAGAGGGAAACTATGAGCAATCTGAGAACCCTATGTAGACCTCAGACGGTGTTCTCTTTCATTACTTGCAGACACCAATTTCGTTCTAGGGTTTCGTTTCGAAACCCTAATTGCAAGCCCCGTTTGCCATCTCCGTTTCTTTATTCTACAATCGGTTCCTGGGTTTCGAATCCCTGATTTCGCGTGAACCAGAGGAGAACCGTGGCCAAGGCAACAAACTGGGCTGAACAAAAATCCCCATATGAAACTCTTGAATTGGAAGGAGATGCTGATGAGGAGCAGATAAAGAATGCTTACAGACGCTTGGCCAAATTCTATCATCCAGATGTCTGCTGGAACGTGGGAGATGTTTTGTTTTTCTTTACAAGAATGTTCGTATGAAGCAGTTCATGGCTATCTATGATGGCAGAGGAACACTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGAGAGAGGCGAAGACAGTATGATATGGATAACTGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGCTAAATCTTCGCGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGAAGGATTCTGGCAAGAGAAAAAAAGGCTTCGGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAGACTATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCAGATAGTGATGAGGCACTGTAGTCAACATGGGGCTTTGTTTCCACATACCAATACCAATACCTAATATTTGATCAATACCTTGATGTCTTCCTCAGCGAATCTAATTATTTTTTATTATTATTTACAAAAGATATATGTACATATATTTTGTTATTTCCATTCTCAAATGAGATTTTAGATTTTCAGTTATGGCTCAATACAATGATGATCTGAAATTTGGAGAAGCCTGAGATAAAAGATCTAGTAACGTCCACGTAATTTCTGCGGCGCGATACTTATGGGACAATTTCTTGTTGAATATTGTGCAAGCTAAAAAGGTTAACCTATTTTGTAAGGGTGTTTTGGGGGGAAGAAAATGAAACGGTGAAGGATTTTCTTTTTGTGCCGACAATAGTATTTACTGAAGTGACTAATAGCATTTTTATGAATTGTTCTTTAATTTATTTAAATAAATTCCAAACTTTGACCCCCTTGTGCCAAGTTTGGTCCTTAATAATAAT

>Glyma04g43400.3   sequence type=transcript   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGATGACTCATGACACAGGGAAAAAAAGATTCGCGGCTCTTATTCATCAAAAAAATGAAAGATTCTGTGAGATTGATGGTGTTAGTTATCGTTGAGGGGCCCACCCAGAAGCTCTTCTCTCCGTTCACAAGGAAGGGTTTGGTACTTTTGTAACTCTCGAATTGGCTTCAAAAATCAGAGGGAAACTATGAGCAATCTGAGAACCCTATGTAGACCTCAGACGGTGTTCTCTTTCATTACTTGCAGACACCAATTTCGTTCTAGGGTTTCGTTTCGAAACCCTAATTGCAAGCCCCGTTTGCCATCTCCGTTTCTTTATTCTACAATCGGTTCCTGGGTTTCGAATCCCTGATTTCGCGTGAACCAGAGGAGAACCGTGGCCAAGGCAACAAACTGGGCTGAACAAAAATCCCCATATGAAACTCTTGAATTGGAAGGAGATGCTGATGAGGAGCAGATAAAGAATGCTTACAGACGCTTGGCCAAATTCTATCATCCAGATGTCTATGATGGCAGAGGAACACTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGAGAGAGGCGAAGACAGTATGATATGGATAACTGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGCTAAATCTTCGCGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGAAGGATTCTGGCAAGAGAAAAAAAGGCTTCGGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAGACTATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCAGATAGTGATGAGGCACTGTAGTCAACATGGGGCTTTGTTTCCACATACCAATACCAATACCTAATATTTGATCAATACCTTGATGTCTTCCTCAGCGAATCTAATTATTTTTTATTATTATTTACAAAAGATATATGTACATATATTTTGTTATTTCCATTCTCAAATGAGATTTTAGATTTTCAGTTATGGCTCAATACAATGATGATCTGAAATTTGGAGAAGCCTGAGATAAAAGATCTAGTAACGTCCACGTAATTTCTGCGGCGCGATACTTATGGGACAATTTCTTGTTGAATATTGTGCAAGCTAAAAAGGTTAACCTATTTTGTAAGGGTGTTTTGGGGGGAAGAAAATGAAACGGTGAAGGATTTTCTTTTTGTGCCGACAATAGTATTTACTGAAGTGACTAATAGCATTTTTATGAATTGTTCTTTAATTTATTTAAATAAATTCCAAACTTTGACCCCCTTGTGCCAAGTTTGGTCCTTAATAATAAT

Coding sequences of Glyma04g43400

Limit To All Plant Sequences

>Glyma04g43400.1   sequence type=CDS   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATAACCTCTCAATACATATTAACTCTGTTTACTCTTCAAGTCTATGATGGCAGAGGAACACTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGAGAGAGGCGAAGACAGTATGATATGGATAACTGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGCTAAATCTTCGCGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGAAGGATTCTGGCAAGAGAAAAAAAGGCTTCGGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAGACTATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCAGATAGTGATGAGGCACTGTAG

>Glyma04g43400.2   sequence type=CDS   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGTTCATGGCTATCTATGATGGCAGAGGAACACTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGAGAGAGGCGAAGACAGTATGATATGGATAACTGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGCTAAATCTTCGCGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGAAGGATTCTGGCAAGAGAAAAAAAGGCTTCGGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAGACTATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCAGATAGTGATGAGGCACTGTAG

>Glyma04g43400.3   sequence type=CDS   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACTGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGCTAAATCTTCGCGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGAAGGATTCTGGCAAGAGAAAAAAAGGCTTCGGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAGACTATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCAGATAGTGATGAGGCACTGTAG

Predicted protein sequences of Glyma04g43400

Limit To All Plant Sequences

>Glyma04g43400.1   sequence type=predicted peptide   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNITSQYILTLFTLQVYDGRGTLEEGETAEARFIKIQAAYELLIDGERRRQYDMDNWVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLVLKKRDLMRRKAEEEKKKTISRLLAAEGLELDDSDSDEAL*

>Glyma04g43400.2   sequence type=predicted peptide   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQFMAIYDGRGTLEEGETAEARFIKIQAAYELLIDGERRRQYDMDNWVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLVLKKRDLMRRKAEEEKKKTISRLLAAEGLELDDSDSDEAL*

>Glyma04g43400.3   sequence type=predicted peptide   gene model=Glyma04g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNWVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLVLKKRDLMRRKAEEEKKKTISRLLAAEGLELDDSDSDEAL*

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