Glyma04g43390 - SoyBase

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Report for Sequence Feature Glyma04g43390

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48977982
stop:	48982501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12350	AT	Annotation by Michelle Graham. TAIR10: 4-phospho-panto-thenoylcysteine synthetase \| chr1:4198870-4200633 FORWARD LENGTH=317	SoyBase	E_val: 6.00E-136	ISS
GO:0015937	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004632	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphopantothenate--cysteine ligase activity	SoyBase	N/A	ISS
KOG2728	KOG	Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase	JGI		ISS
PTHR12290	Panther	CORNICHON	JGI		ISS
PTHR12290:SF2	Panther	CORNICHON-RELATED	JGI		ISS
PF04127	PFAM	DNA / pantothenate metabolism flavoprotein	JGI		ISS
UniRef100_C6TI98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TI98_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JS13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphopantothenate-cysteine ligase n=1 Tax=Medicago truncatula RepID=G7JS13_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g43390 not represented in the dataset	Glyma04g43390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43390

Paralog	Evidence	Comments
Glyma06g11270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g254600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g43390

Limit To All Plant Sequences

>Glyma04g43390.2   sequence type=transcript   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAAATCAATCTATAATTTTTAGCTTGGATTCTTTTTGTGATTAATAAACACCACGCAAATGCCACAACTACAAGATGCTGCTCCACGTTCTGTGAACTCTTCACCTTCACTCTTTTAGATTTTGATGGATGCAGCAAAGGGATTGGAAGCTTCTGGGGAGACCCTTCGTGCAGAAGTGAAAACCTTTTTCGATTCTGCTCCTCCTTTGCAGAACAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCAACCATGAGTCCAACATTCAAGTTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCATATCTTTCAAGTTAGAGACAGATTCAAACATTCTTCTAAATAAAGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTCTCAACTCGCAAGGAGCAAGTGGTGGTTGTCACTAGTGCTGAGAAGGTTACTGTTCAGCGTGATAAGAGTCTGTCTGATAATGATGTAGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGAATCTAGGGAATGGATTTGGCTTCTCGTTGCAGTTTTGGACACTACAACTAATTGCATCAATAAGTCATGATCATGAATAAAAAGGAGAAGAATTAGACAGTATGGACACAGGGCTGTAGAAGAAATGAAATGAGCAGAGACGACAGTTCTAACCATACCTTTGACAGACTTAGGCCATATATGAATGTTGTATTTCACTTGTCCTTCTTATCATTGTTAATTGGGATACCCCGTTTGTCATATTAATTTATAATATCGAAGTTAAGATGTGTGTGGTGAAACTTTGGTACGTTTTTTTGGTTTTACTGGAATTGGTAGTTTAAGATGAACAGATACCATTAATCAACAGCAAAAGGATGATGTATAGTGAAATATTAACCCAGGGTCTGAGATGTGTAATTTACCATTATGAACACAAAGTTGTAATGTATTGTAATTTGTAAGGTTAAAACCACAGAAGAATTTTATTACTCTATTGATCACTGGAATGTGCTGTCACCGAATACATGATGCGTGTTGACACTTCTGGCTATGAAAGTTATTTTACTATACAGTTTGTTCATATGTAATTACTACATATTTCGAATGGATCAAGATATGAGTATATACAATTTTCTCAAGCCC

>Glyma04g43390.3   sequence type=transcript   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACTTCATTCTTATTTTGTTAGACTCAATTTAAGATTTTTGGATGATGGGGAATGTGTCATAAATGATAATCTCTGCATGGATAGGTTTATGTTGATGCACGTGTTTCTGATAAGTGACTTGTGAATTTAGTAGATTTTGATGGATGCAGCAAAGGGATTGGAAGCTTCTGGGGAGACCCTTCGTGCAGAAGTGAAAACCTTTTTCGATTCTGCTCCTCCTTTGCAGAACAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCAACCATGAGTCCAACATTCAAGTTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCATATCTTTCAAGTTAGAGACAGATTCAAACATTCTTCTAAATAAAGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTCTCAACTCGCAAGGAGCAAGTGGTGGTTGTCACTAGTGCTGAGAAGGTTACTGTTCAGCGTGATAAGAGTCTGTCTGATAATGATGTAGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGAATCTAGGGAATGGATTTGGCTTCTCGTTGCAGTTTTGGACACTACAACTAATTGCATCAATAAGTCATGATCATGAATAAAAAGGAGAAGAATTAGACAGTATGGACACAGGGCTGTAGAAGAAATGAAATGAGCAGAGACGACAGTTCTAACCATACCTTTGACAGACTTAGGCCATATATGAATGTTGTATTTCACTTGTCCTTCTTATCATTGTTAATTGGGATACCCCGTTTGTCATATTAATTTATAATATCGAAGTTAAGATGTGTGTGGTGAAACTTTGGTACGTTTTTTTGGTTTTACTGGAATTGGTAGTTTAAGATGAACAGATACCATTAATCAACAGCAAAAGGATGATGTATAGTGAAATATTAACCCAGGGTCTGAGATGTGTAATTTACCATTATGAACACAAAGTTGTAATGTATTGTAATTTGTAAGGTTAAAACCACAGAAGAATTTTATTACTCTATTGATCACTGGAATGTGCTGTCACCGAATACATGATGCGTGTTGACACTTCTGGCTATGAAAGTTATTTTACTATACAGTTTGTTCATATGTAATTACTACATATTTCGAATGGATCAAGATATGAGTATATACAATTTTCTCAAGCCC

Coding sequences of Glyma04g43390

Limit To All Plant Sequences

>Glyma04g43390.1   sequence type=CDS   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGCAAAGGGATTGGAAGCTTCTGGGGAGACCCTTCGTGCAGAAGTGAAAACCTTTTTCGATTCTGCTCCTCCTTTGCAGAACAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCAACCATGAGTCCAACATTCAAGTTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCATATCTTTCAAGTTAGAGACAGATTCAAACATTCTTCTAAATAAAGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTCTCAACTCGCAAGGAGCAAGTGGTGGTTGTCACTAGTGCTGAGAAGGTTACTGTTCAGCGTGATAAGAGTCTGTCTGATAATGATGTAGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGA

>Glyma04g43390.2   sequence type=CDS   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGCAAAGGGATTGGAAGCTTCTGGGGAGACCCTTCGTGCAGAAGTGAAAACCTTTTTCGATTCTGCTCCTCCTTTGCAGAACAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCAACCATGAGTCCAACATTCAAGTTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCATATCTTTCAAGTTAGAGACAGATTCAAACATTCTTCTAAATAAAGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTCTCAACTCGCAAGGAGCAAGTGGTGGTTGTCACTAGTGCTGAGAAGGTTACTGTTCAGCGTGATAAGAGTCTGTCTGATAATGATGTAGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGA

>Glyma04g43390.3   sequence type=CDS   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGCAAAGGGATTGGAAGCTTCTGGGGAGACCCTTCGTGCAGAAGTGAAAACCTTTTTCGATTCTGCTCCTCCTTTGCAGAACAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCAACCATGAGTCCAACATTCAAGTTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCATATCTTTCAAGTTAGAGACAGATTCAAACATTCTTCTAAATAAAGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTCTCAACTCGCAAGGAGCAAGTGGTGGTTGTCACTAGTGCTGAGAAGGTTACTGTTCAGCGTGATAAGAGTCTGTCTGATAATGATGTAGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGA

Predicted protein sequences of Glyma04g43390

Limit To All Plant Sequences

>Glyma04g43390.1   sequence type=predicted peptide   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAAKGLEASGETLRAEVKTFFDSAPPLQNSDEITQKLNQFIQRNSSARRIVCVTSGGTTAPLEQRCVRYVDNFSSGHRGATSTEYFLKAGYAVIFLYRKRSFQPFCRSLPDDPLLECFKPNHESNIQVCEAYSETVKRAIVDHHTAVAGGLLLKLPFNTIFEYLQMLQTIAMSMRCIGPRAMFYLAAAVSDYYVPWKEMVEHKIQSGSSHLLDVKLVQVPKMLSVLRKDWAPLAFCISFKLETDSNILLNKAGAALEKYKMHAVVANELSTRKEQVVVVTSAEKVTVQRDKSLSDNDVENPLIKLLSEKHATYIEDSGR*

>Glyma04g43390.2   sequence type=predicted peptide   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAAKGLEASGETLRAEVKTFFDSAPPLQNSDEITQKLNQFIQRNSSARRIVCVTSGGTTAPLEQRCVRYVDNFSSGHRGATSTEYFLKAGYAVIFLYRKRSFQPFCRSLPDDPLLECFKPNHESNIQVCEAYSETVKRAIVDHHTAVAGGLLLKLPFNTIFEYLQMLQTIAMSMRCIGPRAMFYLAAAVSDYYVPWKEMVEHKIQSGSSHLLDVKLVQVPKMLSVLRKDWAPLAFCISFKLETDSNILLNKAGAALEKYKMHAVVANELSTRKEQVVVVTSAEKVTVQRDKSLSDNDVENPLIKLLSEKHATYIEDSGR*

>Glyma04g43390.3   sequence type=predicted peptide   gene model=Glyma04g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAAKGLEASGETLRAEVKTFFDSAPPLQNSDEITQKLNQFIQRNSSARRIVCVTSGGTTAPLEQRCVRYVDNFSSGHRGATSTEYFLKAGYAVIFLYRKRSFQPFCRSLPDDPLLECFKPNHESNIQVCEAYSETVKRAIVDHHTAVAGGLLLKLPFNTIFEYLQMLQTIAMSMRCIGPRAMFYLAAAVSDYYVPWKEMVEHKIQSGSSHLLDVKLVQVPKMLSVLRKDWAPLAFCISFKLETDSNILLNKAGAALEKYKMHAVVANELSTRKEQVVVVTSAEKVTVQRDKSLSDNDVENPLIKLLSEKHATYIEDSGR*

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