Glyma04g43380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g43380

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48974314
stop:	48977304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77860	AT	Annotation by Michelle Graham. TAIR10: Rhomboid-related intramembrane serine protease family protein \| chr1:29282643-29284458 REVERSE LENGTH=351	SoyBase	E_val: 9.00E-116	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
KOG2289	KOG	Rhomboid family proteins	JGI		ISS
PTHR22936	Panther	RHOMBOID-RELATED	JGI		ISS
PF01694	PFAM	Rhomboid family	JGI		ISS
UniRef100_G7J473	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid family member n=1 Tax=Medicago truncatula RepID=G7J473_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JZB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JZB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43380

Paralog	Evidence	Comments
Glyma06g11280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g254500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g43380

Limit To All Plant Sequences

>Glyma04g43380.2   sequence type=CDS   gene model=Glyma04g43380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAATGCATTGACGTGAAGCTCTCTCCTGCACCGGACCAAAGGATTCCGTTGATGAGATCAAGAAGAGGACGGCGGCGCGGCGACACGTGGGTGGTGTCGGTGTTCGTCATAATCCAAATCGGTGTTTTCATCGCCACCATGCTCGTCAACGATTGCTGGAACAATTCTCACGGCGATTGCGTTCTCCAACCCCTCGGAAGGTTCTCCTTCCAGCCTCTTCCCGAGAATCCTCTCTTGGGCCCTTCTCAGTCGAAGTTAGATGAAATGGGAGCTCTTCGATGGAACCTTTTGACAGAGCATCATCAAACATGGCGCCTTTTCACATTTCCATTTCTGCATGCTGGACTCTTCCACCTGCTCCTCAATCTCTCCAGTGTCATCTATGTGGGAGTTAACCTAGAGCACCACTTTGGACCCATAAGGATTGGTATAATCTATGCATTGTCTGCCTTTGTGGGTTCCTTGGTGGCTTCTCTTTTTCTCCAAAACATCCCCGCTGTTGGTGCTTCCGGTGCTTTATATGGATTACTGGGAACATTGCTTTCGGAACTTGTTTGGAACTGGAAATTCCATTCCAATAAGATTTCAGCAATAGCATCATTAGTCTTTGTCTTTGTGTGCAACTTCGTCCTTGGTTTTCTGCCTTATGTAGACAATTTTGCAAGCATGGGAGGTTTCATATCAGGATTCCTTCTTGGATCTGTTTTTTTACTATGCCCTCAGATCCAACCTGTAGCTCCAAATAAAGGAGGCCTGATTGATTATGGGGTCAAAAGTTACGTCAAGTTAAAGTTGAAGGAAAAGCTGGACAGACCAGTTCTCAGGATTGTTTCTCTTATCCTCTTCAGCCTTTTATTGGCTGGTTGTCTTGTGGCTGTTCTTCATGGAATCAACATCAGCAGTTATTGCACATGGTGTCCATATGTCGACTGTATCCCTTTTACAAGCTGGCACTGCAAAGACACAGAAACCTCTTGTGAGACAATGGTGAGCAATGCTCAGCTGACAATGACCTGTATTGGGAATGGCAATTTCCGAGTATTTCCTTTTACCAACATCTCTCGGGCAAGGTTTAATGATTTGTGCAATCTGATATGCTGA

Predicted protein sequences of Glyma04g43380

Limit To All Plant Sequences

>Glyma04g43380.2   sequence type=predicted peptide   gene model=Glyma04g43380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAECIDVKLSPAPDQRIPLMRSRRGRRRGDTWVVSVFVIIQIGVFIATMLVNDCWNNSHGDCVLQPLGRFSFQPLPENPLLGPSQSKLDEMGALRWNLLTEHHQTWRLFTFPFLHAGLFHLLLNLSSVIYVGVNLEHHFGPIRIGIIYALSAFVGSLVASLFLQNIPAVGASGALYGLLGTLLSELVWNWKFHSNKISAIASLVFVFVCNFVLGFLPYVDNFASMGGFISGFLLGSVFLLCPQIQPVAPNKGGLIDYGVKSYVKLKLKEKLDRPVLRIVSLILFSLLLAGCLVAVLHGINISSYCTWCPYVDCIPFTSWHCKDTETSCETMVSNAQLTMTCIGNGNFRVFPFTNISRARFNDLCNLIC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain